Please, I'm getting the Talairach Failure Detection problem in one of my subjects (message enclosed below).

I tried to follow the tutorial to fix a bad Talairach with:

1) tkregister2 --mgz -s <id> --fstal --> not green lines appear, I attach a screenshot. Both the standard and my MRI are slided down to the bottom of the window. See also attached tkmedit file.

2) Anyway, I tried also -notal-check to see if something changed in spite Talairach failed, but it fails also (off course).

3) I used -use-mritotal but I still get the same. However, this time processing finishes without errors, but my MRI is still at the bottom of the window and output cut all what is between middle temporal regions and neck.

Please, any idea?

Thanks a lot

Daniel

#@# Talairach Failure Detection Wed Oct 10 09:08:27 CEST 2012
/home/daniel/FreeSurfer/subjects/N001511_d2/mri

talairach_afd -T 0.005 -xfm transforms/talairach.xfm

ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string.
See http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
Linux siv 2.6.32-33-generic #72-Ubuntu SMP Fri Jul 29 21:07:13 UTC 2011 x86_64 GNU/Linux

recon-all -s N001511_d2 exited with ERRORS at Wed Oct 10 09:08:27 CEST 2012

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting