Dear. Freesurfer experts.
Hi.
i appreciate your help in advance!
I'm using freesurfer version 5.3.0.
I tried selxavg3-sess and got the error dimension mismatch between mask and 2th run.
Actually, the number of slices of the 1st run and the rest are different. Is it the reason why I get this error message?
Please let me know what I should do to correct this error!
Below are command and error lines.
command: selxavg3-sess -s $SUBJECT -analysis retino -df sessdirfile
error:
--------------------------------------------------------------
selxavg3-sess logfile is /home/jbang/Projects/replay/log/log/selxavg3-sess-bold_retino-retino-160309115326.log
--------------------------------------------------------------
-------------------------------------------
/home/jbang/Projects/replay/epi/replay06
Wed Mar 9 11:53:33 EST 2016
anadir = /home/jbang/Projects/replay/epi/replay06/bold_retino/retino
DoGLMFit = 1
DoContrasts = 1
UpdateNeeded = 1
------------------------------------------
------- matlab output --------------------
Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen.
< M A T L A B (R) >
Copyright 1984-2009 The MathWorks, Inc.
Version 7.8.0.347 (R2009a) 64-bit (glnxa64)
February 12, 2009
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit
www.mathworks.com.
>> >> >> >> >> >> >>
sxa3pwd =
/home/jbang/Projects/replay/log
>>
sxa3cmd =
/usr/local/freesurfer//fsfast/bin/selxavg3-sess -s replay06 -analysis retino -df sessdirfile
>> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# replay06 ###############################
/home/jbang/Projects/replay/epi/replay06
-------------------------
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
/usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
/usr/local/freesurfer/matlab/MRIread.m
-------------------------
outtop = /home/jbang/Projects/replay/epi
Extension format = nii.gz
1 HorVer.mat
2 UpperLower.mat
nruns = 4
autostimdur =
outanadir = /home/jbang/Projects/replay/epi/replay06/bold_retino/retino
Found 62211/180708 (34.4) voxels in mask
Creating Design Matrix
... creation time = 0.008 sec
DoMCFit = 0
ntptot = 480, nX = 28, DOF = 452
Saving X matrix to /home/jbang/Projects/replay/epi/replay06/bold_retino/retino/Xtmp.mat
XCond = 199.451 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.499283 (t=0.024843)
2 -0.25 -0.268756 (t=0.047925)
3 0 -0.0441607 (t=0.069497)
4 0.25 0.16942 (t=0.093633)
5 0.5 0.359032 (t=0.117433)
AR1 Correction M: 0.0657489 1.15858
Computing contrast matrices
OLS Beta Pass
run 1 t= 0.0
Global Mean 855.07
run 2 t= 3.1
ERROR: dimension mismatch between mask and 2th run
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n