Hello Dear FreeSurfer Experts,
I am trying to run "recon-all -s subject -localGI" command on my Mac bash terminal. I am getting following error.
I am using using Freesurfer V 6.0 and running on MacOS High Sierra (version 10.13)
I also run the istallation update :"sudo
-E fs_update" as per suggestion on the release note but still getting same error.
Any help to resolve this issue
would be greatly appreciated.
Thank you so much for all your
help and support.
Best regards
Manoj
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Manojs-iMac:cases manojkumar$ export SUBJECTS_DIR=/Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf
Manojs-iMac:cases manojkumar$ cd $SUBJECTS_DIR
Manojs-iMac:surf manojkumar$ mris_compute_lgi --i lh.pial
=================
rm -Rf /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mkdir -p /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz
=================
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort
ERROR: mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz failed!
Manojs-iMac:surf manojkumar$