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---------- Forwarded message ----------
From: abedi000@citymail.cuny.edu <abedi000@citymail.cuny.edu>
Date: Tuesday, May 21, 2019
Subject:
To: "amibedi273@gmail.com" <amibedi273@gmail.com>

Hi Freesurfer developers,

While running the mri glmfit sim command for a smoothing of 30 FWHM, I got the following error-

Original mri_glmfit command line:
cmdline mri_glmfit.bin --y lh.BINGE15.g2v1.30B.mgh --fsgd BINGE15.g2v1.txt dods --C BINGE.g2v1.group-x-LDH_age.mtx --surf fsaverage lh --cortex --glmdir lh.BINGE15_g2v1.group-x-LDH_age.30B.glmdir

DoSim = 0
UseCache = 1
DoPoll = 0
DoPBSubmit = 0
DoBackground = 0
DiagCluster = 0
gd2mtx = dods
fwhm = 53.156463
ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm53/abs/th13/mc-z.csd

I researched on the Freesurfer wiki page and found Dr Greve answered a similar question saying-"When running mri_glmfit-sim, add --cache-dir /path/to/mult-comp-cor" but I dont understand. What is this path?

Thank You!

Best,

Amrita

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