You can run aparcstats2table to get a table of the means of each ROI for each subject. Then pass that to mri_glmfit with --table instead of --y with the other options being the same
doug

On 6/24/14 12:05 PM, Chris Wertz wrote:

Hi Freesurfer experts,

Is it possible to change the dependent variable of a whole hemisphere's thickness to a specific brain region's thickness? For example I wish to test one of my independent variables with right hemisphere superior parietal region's thickness as opposed to the whole right hemisphere's thickness.

Thanks,

Chris

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