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From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 墨初 <530337973@qq.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 17 July 2018 at 13:40
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T2.sh

Dear  freesurfer experts,

when i run the command“segmentHA_T2.sh subject001 T2.nii T2 1” ,it runs as following:

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 Making Left-Thalamus-Proper map to reduced label 10
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Making Left-choroid-plexus map to reduced label 11
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Making Left-VentralDC map to reduced label 12
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Making Left-Accumbens-area map to reduced label 13
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Making Unknown map to reduced label 14
Computing hyperparameters for estimation of Gaussians parameters
znzreadInt: znzread failed
No such file or directory
Estimating typical intensities of molecular layer and alveus
numberOfLabels: 2
Rasterizing mesh...here: 2
here2: 2
done
Smoothing mesh collection with kernel size 1.500000 ...Smoothing class: 0
Smoothing class: 1
Smoothing class: 2
Smoothing class: 3
Smoothing class: 4
Smoothing class: 5
Smoothing class: 6
Smoothing class: 7
Smoothing class: 8
Smoothing class: 9
Smoothing class: 10
Smoothing class: 11
Smoothing class: 12
Smoothing class: 13
done
numberOfImages = 2
Image: 0
Image: 2
Iteration 1 of 7
1 0.00035804
2 0.089592

fianally,it stop here and can't run anymore,no error reported。I didn't know what‘s wrong？

What can i do？

Thanks very much

Fiona Ding