Dear Freesurfer team,

I'm studying in longitudinal hippocampal changes. Currently I have output from recon-all with T1 and T2-FLAIR across each subject for each time point and output from the longitudinal pipeline for each subject. 

Now, I want to run the longitudinal hippocampal subfield but the documentation states that it is for T1 scans only. 

Can I run segmentHA_T1_long.sh with above output or do I need to rerun all above process with only T1 scans.

Thank you.

Best regards,

Shizuka