Your input here is a localizer image:

Protocol          t2_haste_localizer_p2



On Mon, Mar 19, 2018 at 12:51 PM, Z Hessam <z.hessam@gmail.com> wrote:
>
> hello, i have problem again with a new data set.
> this is the recon-all.log file in attach
>
> thanks a lot
>
>
> On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam <z.hessam@gmail.com> wrote:
>>
>> thank you for your attention
>>
>> regards
>>
>> On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
>>>
>>> looks like the acquisition is not what you would need to run FreeSurfer on. Looking at the log I think your input is a T2-weighted image (we require a T1) with a slice thickness of 9mm (we require all voxel dimensions to be <=1.5mm or so)
>>>
>>>
>>> cheers
>>> Bruce
>>>
>>>
>>>
>>> On Thu, 8 Feb 2018, Z Hessam wrote:
>>>
>>>> sure...
>>>> with first code i convert *.dcm files.
>>>> with second code i want to segment data:
>>>>
>>>> 1) recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1 -subjid dyegmoh
>>>> 2) recon-all -s dyegmoh -all
>>>>
>>>> and the log file is attached(recon-all_dyegmoh.log).
>>>>
>>>>
>>>>
>>>>
>>>> On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
>>>>       can you send us the complete command you ran, the entire screen output and the
>>>>       recon-all.log file?
>>>>
>>>>       cheers
>>>>       Bruce
>>>>       On Thu, 8 Feb 2018, Z Hessam wrote:
>>>>
>>>>             Hello FreeSurfer develpers
>>>>             I'm attempting to run " recon-all " command on a file of dicom data, and
>>>>             encounter with an error
>>>>             command:
>>>>
>>>>             recon-all -s dyegmoh exited with ERRORS  at Thu Feb  8 17:08:16 +0330 2018
>>>>
>>>>             how can i understand why this error happens  and what should i do to solve
>>>>             it?
>>>>
>>>>
>>>>
>>>>
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>>>
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> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and properly
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