I am going through FreeSurfer's repeated measures anova tutorial using fspalm. I understand that fspalm frontend can only do t-tests at the moment and NOT F tests as noted in this thread: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg68722.html. 

So I am trying to run F-contrast on PALM but I was wondering if I also have to worry about bonferroni clusterwise correction. If I used --2spaces option when using fspalm frontend, I thought I should also try to apply the equivalent bonferroni correction when running F-test on FSL palm. 

For the F-test on FSL palm, it looked like I could run the following command with the addition of -f and -ftestonly flags (shown in underline): 

taken from this email thread- MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;42baf4dd.1608

Would this be equivalent to the bonferroni correction methods that fspalm uses? When I go through fspalm.log it seemed to run mri_surfcluster and mri_segstats after running fspalm with certain commands having --sig2p-max and --bonferroni-max 2 flags. 

Thank you in advance for your help!

Best,

Julia Shin