I've never used that, but you can use mris_annotation2label to break the annotation in to individual labels,then use mris_label2annot to put the ones you want back together.

doug

On 3/8/11 10:13 PM, Allie Rosen wrote:

Hi Everyone,

I'm wondering if it is possible to use the "cut" function in TkSurfer to delete specific atlas annotations. For example, can I create a label of my specific area of interest, inverse the label to highlight the rest of the brain, and then either cut out these regions or make them transparent?

Can anyone help me out?

Thank you,

Allie Rosen, MSc
Graduate Student, Department of Neurosurgery
Toronto Western Hospital 14-327
399 Bathurst St.
University of Toronto
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