Tue Feb 4 16:42:18 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -i /data/sub-M137/ses-01/anat/sub-M137_ses-01_T1w.nii -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-M137 -sd /out/sourcedata/freesurfer subjid sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1048576 memorylocked 8192 kbytes maxproc unlimited maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 13Gi 27Gi 94Mi 21Gi 47Gi Swap: 15Gi 3.6Gi 12Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:18-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:19-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:19-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-16:42:19-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /out/sourcedata/freesurfer/sub-M137 mri_convert /data/sub-M137/ses-01/anat/sub-M137_ses-01_T1w.nii /out/sourcedata/freesurfer/sub-M137/mri/orig/001.mgz mri_convert /data/sub-M137/ses-01/anat/sub-M137_ses-01_T1w.nii /out/sourcedata/freesurfer/sub-M137/mri/orig/001.mgz reading from /data/sub-M137/ses-01/anat/sub-M137_ses-01_T1w.nii... TR=5.65, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.999968, 0.00804396, 0.000396839) j_ras = (-0.00801492, 0.989105, 0.146991) k_ras = (0.000789872, -0.146989, 0.989138) writing to /out/sourcedata/freesurfer/sub-M137/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Tue Feb 4 16:42:47 UTC 2025 Found 1 runs /out/sourcedata/freesurfer/sub-M137/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /out/sourcedata/freesurfer/sub-M137/mri/orig/001.mgz /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz mri_info /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz type: MGH dimensions: 150 x 1024 x 1024 voxel sizes: 1.000000, 0.240234, 0.240234 type: FLOAT (3) fov: 246.000 dof: 1 xstart: -75.0, xend: 75.0 ystart: -123.0, yend: 123.0 zstart: -123.0, zend: 123.0 TR: 5.65 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = -0.0080, z_r = 0.0008, c_r = 2.3302 : x_a = 0.0080, y_a = 0.9891, z_a = -0.1470, c_a = 9.4883 : x_s = 0.0004, y_s = 0.1470, z_s = 0.9891, c_s = 20.8387 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 -0.0019 0.0002 -71.7787 0.0080 0.2376 -0.0353 -94.6953 0.0004 0.0353 0.2376 -118.9348 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 0.0577126 ras to voxel transform: 1.0000 0.0080 0.0004 72.5853 -0.0334 4.1173 0.6119 460.2616 0.0033 -0.6119 4.1174 431.9967 0.0000 0.0000 0.0000 1.0000 /out/sourcedata/freesurfer/sub-M137 mri_convert /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz --conform mri_convert /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz --conform reading from /out/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz... TR=5.65, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.999968, 0.00804396, 0.000396839) j_ras = (-0.00801492, 0.989105, 0.146991) k_ras = (0.000789872, -0.146989, 0.989138) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 159428 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz... mri_add_xform_to_header -c /out/sourcedata/freesurfer/sub-M137/mri/transforms/talairach.xfm /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz INFO: extension is mgz mri_info /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz orig.mgz ======================================== Volume information for /out/sourcedata/freesurfer/sub-M137/mri/orig.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 5.65 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 2.3302 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 9.4883 : x_s = 0.0000, y_s = -1.0000, z_s = -0.0000, c_s = 20.8387 talairach xfm : /out/sourcedata/freesurfer/sub-M137/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 130.3303 0.0000 0.0000 1.0000 -118.5117 0.0000 -1.0000 -0.0000 148.8387 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 0.0000 -0.0000 130.3302 -0.0000 -0.0000 -1.0000 148.8387 0.0000 1.0000 0.0000 118.5117 -0.0000 -0.0000 -0.0000 1.0000 #-------------------------------------------- #@# Talairach Tue Feb 4 16:43:34 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /out/sourcedata/freesurfer/sub-M137/mri /opt/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.3.2 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Tue Feb 4 16:43:34 UTC 2025 tmpdir is ./tmp.mri_nu_correct.mni.39713 cd /out/sourcedata/freesurfer/sub-M137/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.39713/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.39713/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.39713/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.39713/nu0.mgz... TR=5.65, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.18279e-10, 0) j_ras = (1.74623e-10, 0, -1) k_ras = (6.98492e-10, 1, -1.49012e-08) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Tue Feb 4 16:45:50 UTC 2025 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... mv -f /out/sourcedata/freesurfer/sub-M137/mri/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt /out/sourcedata/freesurfer/sub-M137/mri/transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt Started at Tue Feb 4 16:45:50 UTC 2025 Ended at Tue Feb 4 16:46:04 UTC 2025 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /opt/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.3.2 --src: orig.mgz src image (geometry). --trg: /opt/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.08267 0.03587 -0.01434 -1.31943; -0.02744 0.89585 0.38453 -22.79525; 0.01490 -0.31320 1.01167 -15.82581; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Tue Feb 4 16:46:07 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.5868, pval=0.2817 >= threshold=0.0050) awk -f /opt/freesurfer/bin/extract_talairach_avi_QA.awk /out/sourcedata/freesurfer/sub-M137/mri/transforms/talairach_avi.log tal_QC_AZS /out/sourcedata/freesurfer/sub-M137/mri/transforms/talairach_avi.log TalAviQA: 0.97117 z-score: -1 #-------------------------------------------- #@# Nu Intensity Correction Tue Feb 4 16:46:07 UTC 2025 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /out/sourcedata/freesurfer/sub-M137/mri /opt/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.3.2 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Tue Feb 4 16:46:07 UTC 2025 tmpdir is ./tmp.mri_nu_correct.mni.39957 cd /out/sourcedata/freesurfer/sub-M137/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.39957/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.39957/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.39957/ones.mgz 7.3.2 cwd /out/sourcedata/freesurfer/sub-M137/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.39957/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.39957/ones.mgz sysname Linux hostname ce0d19ffe332 machine x86_64 user root input ./tmp.mri_nu_correct.mni.39957/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.39957/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.39957/ones.mgz Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.39957/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.39957/sum.junk --avgwf ./tmp.mri_nu_correct.mni.39957/input.mean.dat 7.3.2 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.39957/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.39957/sum.junk --avgwf ./tmp.mri_nu_correct.mni.39957/input.mean.dat sysname Linux hostname ce0d19ffe332 machine x86_64 user root whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.39957/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.39957/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.39957/ones.mgz --i ./tmp.mri_nu_correct.mni.39957/nu0.mgz --sum ./tmp.mri_nu_correct.mni.39957/sum.junk --avgwf ./tmp.mri_nu_correct.mni.39957/output.mean.dat 7.3.2 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.39957/ones.mgz --i ./tmp.mri_nu_correct.mni.39957/nu0.mgz --sum ./tmp.mri_nu_correct.mni.39957/sum.junk --avgwf ./tmp.mri_nu_correct.mni.39957/output.mean.dat sysname Linux hostname ce0d19ffe332 machine x86_64 user root whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.39957/ones.mgz Loading ./tmp.mri_nu_correct.mni.39957/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.39957/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.39957/nu0.mgz ./tmp.mri_nu_correct.mni.39957/nu0.mgz mul 1.15697173192976087844 Saving result to './tmp.mri_nu_correct.mni.39957/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.39957/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.39957/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.39957/nu0.mgz... TR=5.65, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.18279e-10, 0) j_ras = (1.74623e-10, 0, -1) k_ras = (6.98492e-10, 1, -1.49012e-08) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 4 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 2, i2 = 29 #mri_make_uchar# mapping 5 75 to 3 110 : b -5.40926 m 1.54503 : thresh 3.50106 maxsat 168.546 : nzero 12643217 nsat 82820 Tue Feb 4 16:48:35 UTC 2025 mri_nu_correct.mni done mri_add_xform_to_header -c /out/sourcedata/freesurfer/sub-M137/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Tue Feb 4 16:48:35 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.08267 0.03587 -0.01434 -1.31943; -0.02744 0.89585 0.38453 -22.79525; 0.01490 -0.31320 1.01167 -15.82581; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 17 Starting OpenSpline(): npoints = 17 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 65 (65), valley at 50 (50) csf peak at 20, setting threshold to 50 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 63 (63), valley at 51 (51) csf peak at 19, setting threshold to 48 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 11 seconds. Started at Tue Feb 4 16:42:18 UTC 2025 Ended at Tue Feb 4 16:49:46 UTC 2025 #@#%# recon-all-run-time-hours 0.124 recon-all -s sub-M137 finished without error at Tue Feb 4 16:49:46 UTC 2025 #New# invocation of recon-all Tue Feb 4 17:22:54 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -openmp 8 -subjid sub-M137 -sd /out/sourcedata/freesurfer -gcareg subjid sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1048576 memorylocked 8192 kbytes maxproc unlimited maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 10Gi 18Gi 127Mi 33Gi 50Gi Swap: 15Gi 3.6Gi 12Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:22:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #------------------------------------- #@# EM Registration Tue Feb 4 17:22:55 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /opt/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 8 == reading 1 input volumes... logging results to talairach.log reading '/opt/freesurfer/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=19.0 skull bounding box = (61, 66, 33) --> (192, 199, 207) finding center of left hemi white matter using (105, 110, 120) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (89,94,99) --> (121, 126,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 105 +- 5.3 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 initial log_p = -4.103 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.087749 @ (-10.526, -10.526, -10.526) max log p = -3.898049 @ (5.263, 5.263, -5.263) max log p = -3.898049 @ (0.000, 0.000, 0.000) max log p = -3.871652 @ (3.947, -1.316, 3.947) max log p = -3.871652 @ (0.000, 0.000, 0.000) max log p = -3.871652 @ (0.000, 0.000, 0.000) max log p = -3.871652 @ (0.000, 0.000, 0.000) max log p = -3.871652 @ (0.000, 0.000, 0.000) Found translation: (-1.3, -6.6, -11.8): log p = -3.872 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.535, old_max_log_p =-3.872 (thresh=-3.9) 1.06375 0.00000 0.00000 -9.48331; 0.00000 1.11081 0.29764 -55.42949; 0.00000 -0.23650 0.88261 39.19040; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 12 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.535, old_max_log_p =-3.535 (thresh=-3.5) 1.06375 0.00000 0.00000 -9.48331; 0.00000 1.11081 0.29764 -55.42949; 0.00000 -0.23650 0.88261 39.19040; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 12 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.420, old_max_log_p =-3.535 (thresh=-3.5) 1.04250 -0.03643 -0.01182 -2.67981; 0.03287 1.07190 0.34789 -60.15445; 0.00000 -0.32021 0.89356 46.83461; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 12 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.420, old_max_log_p =-3.420 (thresh=-3.4) 1.04250 -0.03643 -0.01182 -2.67981; 0.03287 1.07190 0.34789 -60.15445; 0.00000 -0.32021 0.89356 46.83461; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 12 seconds. **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.402, old_max_log_p =-3.420 (thresh=-3.4) 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 12 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.402, old_max_log_p =-3.402 (thresh=-3.4) 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.402 (old=-4.103) transform before final EM align: 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 009: -log(p) = 4.0 after pass:transform: ( 1.04, -0.03, -0.03, -2.05) ( 0.03, 1.06, 0.36, -60.46) ( 0.02, -0.34, 0.89, 47.74) IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESpass 2 through quasi-newton minimization... IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = 4.0 tol 0.000000 final transform: 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 825712 FSRUNTIME@ mri_em_register 0.0318 hours 8 threads registration took 1 minutes and 54 seconds. Started at Tue Feb 4 17:22:54 UTC 2025 Ended at Tue Feb 4 17:24:49 UTC 2025 #@#%# recon-all-run-time-hours 0.032 recon-all -s sub-M137 finished without error at Tue Feb 4 17:24:49 UTC 2025 #New# invocation of recon-all Tue Feb 4 17:24:54 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon2-volonly -openmp 8 -subjid sub-M137 -sd /out/sourcedata/freesurfer -nogcareg subjid sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1048576 memorylocked 8192 kbytes maxproc unlimited maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 11Gi 18Gi 104Mi 33Gi 50Gi Swap: 15Gi 3.6Gi 12Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-17:24:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------- #@# CA Normalize Tue Feb 4 17:24:55 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /opt/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/opt/freesurfer/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=19.0 skull bounding box = (61, 66, 33) --> (192, 199, 207) finding center of left hemi white matter using (105, 110, 120) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (89,94,99) --> (121, 126,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 105 +- 5.3 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 using 246437 sample points... INFO: compute sample coordinates transform 1.04481 -0.03097 -0.02641 -2.05337; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73507; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (128, 67, 33) --> (193, 179, 204) Left_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0 1 of 801 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (67, 67, 33) --> (131, 172, 206) Right_Cerebral_White_Matter: limiting intensities to 89.0 --> 132.0 0 of 712 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 150, 66) --> (178, 191, 122) Left_Cerebellum_White_Matter: limiting intensities to 112.0 --> 132.0 15 of 22 (68.2%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 150, 64) --> (130, 191, 124) Right_Cerebellum_White_Matter: limiting intensities to 90.0 --> 132.0 1 of 14 (7.1%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (115, 137, 102) --> (148, 199, 134) Brain_Stem: limiting intensities to 104.0 --> 132.0 14 of 30 (46.7%) samples deleted using 1579 total control points for intensity normalization... bias field = 0.984 +- 0.065 12 of 1548 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (128, 67, 33) --> (193, 179, 204) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 978 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (67, 67, 33) --> (131, 172, 206) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 868 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 150, 66) --> (178, 191, 122) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 11 of 66 (16.7%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 150, 64) --> (130, 191, 124) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 40 of 82 (48.8%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (115, 137, 102) --> (148, 199, 134) Brain_Stem: limiting intensities to 88.0 --> 132.0 13 of 104 (12.5%) samples deleted using 2098 total control points for intensity normalization... bias field = 1.023 +- 0.070 11 of 2021 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (128, 67, 33) --> (193, 179, 204) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 974 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (67, 67, 33) --> (131, 172, 206) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 916 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 150, 66) --> (178, 191, 122) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 55 of 121 (45.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (88, 150, 64) --> (130, 191, 124) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 83 of 116 (71.6%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (115, 137, 102) --> (148, 199, 134) Brain_Stem: limiting intensities to 88.0 --> 132.0 72 of 204 (35.3%) samples deleted using 2331 total control points for intensity normalization... bias field = 1.021 +- 0.065 5 of 2092 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 48 seconds. #-------------------------------------- #@# CA Reg Tue Feb 4 17:25:42 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /opt/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 8 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/opt/freesurfer/average/RB_all_2020-01-02.gca'... label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.156 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.981519 #FOTS# QuadFit found better minimum quadopt=(dt=221.952,rms=0.907271) vs oldopt=(dt=369.92,rms=0.930608) #GCMRL# 0 dt 221.952000 rms 0.907 7.565% neg 0 invalid 762 tFOTS 4.3950 tGradient 1.7460 tsec 6.4570 #FOTS# QuadFit found better minimum quadopt=(dt=226.629,rms=0.878815) vs oldopt=(dt=369.92,rms=0.885089) #GCMRL# 1 dt 226.629026 rms 0.879 3.136% neg 0 invalid 762 tFOTS 4.4900 tGradient 2.0090 tsec 6.8170 #FOTS# QuadFit found better minimum quadopt=(dt=180.772,rms=0.867145) vs oldopt=(dt=92.48,rms=0.87052) #GCMRL# 2 dt 180.771930 rms 0.867 1.328% neg 0 invalid 762 tFOTS 4.5160 tGradient 2.1330 tsec 6.9950 #FOTS# QuadFit found better minimum quadopt=(dt=221.952,rms=0.859858) vs oldopt=(dt=369.92,rms=0.861131) #GCMRL# 3 dt 221.952000 rms 0.860 0.840% neg 0 invalid 762 tFOTS 4.0780 tGradient 1.8330 tsec 6.2430 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.856001) vs oldopt=(dt=92.48,rms=0.856812) #GCMRL# 4 dt 129.472000 rms 0.856 0.449% neg 0 invalid 762 tFOTS 4.3680 tGradient 1.8020 tsec 6.4830 #FOTS# QuadFit found better minimum quadopt=(dt=1183.74,rms=0.844064) vs oldopt=(dt=1479.68,rms=0.84447) #GCMRL# 5 dt 1183.744000 rms 0.844 1.395% neg 0 invalid 762 tFOTS 4.3760 tGradient 1.7640 tsec 6.4800 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.840012) vs oldopt=(dt=92.48,rms=0.840189) #GCMRL# 6 dt 110.976000 rms 0.840 0.480% neg 0 invalid 762 tFOTS 4.2880 tGradient 1.8450 tsec 6.4410 #FOTS# QuadFit found better minimum quadopt=(dt=887.808,rms=0.83714) vs oldopt=(dt=1479.68,rms=0.837701) #GCMRL# 7 dt 887.808000 rms 0.837 0.342% neg 0 invalid 762 tFOTS 4.3200 tGradient 1.7400 tsec 6.3670 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.834739) vs oldopt=(dt=369.92,rms=0.834869) #GCMRL# 8 dt 517.888000 rms 0.835 0.287% neg 0 invalid 762 tFOTS 4.3950 tGradient 1.7370 tsec 6.4520 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.83342) vs oldopt=(dt=92.48,rms=0.833614) #GCMRL# 9 dt 129.472000 rms 0.833 0.000% neg 0 invalid 762 tFOTS 4.3830 tGradient 1.7950 tsec 6.5200 #GCMRL# 10 dt 129.472000 rms 0.833 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8380 tsec 2.1640 #GCMRL# 11 dt 129.472000 rms 0.833 0.061% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8390 tsec 2.1870 #GCMRL# 12 dt 129.472000 rms 0.832 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.9020 tsec 2.2280 #GCMRL# 13 dt 129.472000 rms 0.831 0.143% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.9530 tsec 2.2880 #GCMRL# 14 dt 129.472000 rms 0.829 0.185% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7650 tsec 2.0830 #GCMRL# 15 dt 129.472000 rms 0.827 0.216% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7370 tsec 2.0710 #GCMRL# 16 dt 129.472000 rms 0.826 0.205% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.9590 tsec 2.2900 #GCMRL# 17 dt 129.472000 rms 0.824 0.203% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7550 tsec 2.0720 #GCMRL# 18 dt 129.472000 rms 0.822 0.184% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7680 tsec 2.1230 #GCMRL# 19 dt 129.472000 rms 0.821 0.165% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8520 tsec 2.1860 #GCMRL# 20 dt 129.472000 rms 0.820 0.155% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8100 tsec 2.1150 #GCMRL# 21 dt 129.472000 rms 0.819 0.151% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6450 tsec 1.9560 #GCMRL# 22 dt 129.472000 rms 0.817 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5120 tsec 1.7980 #GCMRL# 23 dt 129.472000 rms 0.816 0.122% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8200 tsec 2.1240 #GCMRL# 24 dt 129.472000 rms 0.816 0.108% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6700 tsec 1.9710 #FOTS# QuadFit found better minimum quadopt=(dt=1183.74,rms=0.815203) vs oldopt=(dt=1479.68,rms=0.815244) #GCMRL# 25 dt 1183.744000 rms 0.815 0.000% neg 0 invalid 762 tFOTS 4.5280 tGradient 1.8080 tsec 6.6930 #GCAMreg# pass 0 level1 5 level2 1 tsec 107.719 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.815694 #FOTS# QuadFit found better minimum quadopt=(dt=0.0050575,rms=0.815226) vs oldopt=(dt=0.0036125,rms=0.815226) #GCMRL# 27 dt 0.005058 rms 0.815 0.057% neg 0 invalid 762 tFOTS 5.5830 tGradient 1.5470 tsec 7.4590 setting smoothness cost coefficient to 0.615 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.824708 #FOTS# QuadFit found better minimum quadopt=(dt=69.3333,rms=0.821269) vs oldopt=(dt=103.68,rms=0.821837) #GCMRL# 29 dt 69.333333 rms 0.821 0.417% neg 0 invalid 762 tFOTS 4.0910 tGradient 1.2410 tsec 5.6310 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.817623) vs oldopt=(dt=103.68,rms=0.818241) #GCMRL# 30 dt 145.152000 rms 0.818 0.444% neg 0 invalid 762 tFOTS 4.1150 tGradient 1.5110 tsec 5.9300 #FOTS# QuadFit found better minimum quadopt=(dt=331.776,rms=0.810736) vs oldopt=(dt=414.72,rms=0.810808) #GCMRL# 31 dt 331.776000 rms 0.811 0.842% neg 0 invalid 762 tFOTS 4.0170 tGradient 1.6200 tsec 5.9440 #FOTS# QuadFit found better minimum quadopt=(dt=78.6087,rms=0.80718) vs oldopt=(dt=25.92,rms=0.808413) #GCMRL# 32 dt 78.608696 rms 0.807 0.439% neg 0 invalid 762 tFOTS 3.9530 tGradient 1.2980 tsec 5.5640 #FOTS# QuadFit found better minimum quadopt=(dt=84.3175,rms=0.80536) vs oldopt=(dt=103.68,rms=0.805453) #GCMRL# 33 dt 84.317460 rms 0.805 0.000% neg 0 invalid 762 tFOTS 4.0510 tGradient 1.5810 tsec 5.9630 #GCMRL# 34 dt 84.317460 rms 0.805 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4770 tsec 1.7890 #GCMRL# 35 dt 84.317460 rms 0.803 0.195% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4920 tsec 1.8090 #GCMRL# 36 dt 84.317460 rms 0.800 0.343% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5040 tsec 1.8040 #GCMRL# 37 dt 84.317460 rms 0.798 0.287% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4870 tsec 1.7830 #GCMRL# 38 dt 84.317460 rms 0.796 0.267% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5710 tsec 1.8780 #GCMRL# 39 dt 84.317460 rms 0.794 0.300% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5200 tsec 1.8260 #GCMRL# 40 dt 84.317460 rms 0.791 0.314% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5750 tsec 1.8770 #GCMRL# 41 dt 84.317460 rms 0.790 0.204% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4220 tsec 1.7190 #GCMRL# 42 dt 84.317460 rms 0.789 0.131% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4390 tsec 1.7240 #GCMRL# 43 dt 84.317460 rms 0.787 0.193% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3850 tsec 1.7040 #GCMRL# 44 dt 84.317460 rms 0.786 0.174% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3410 tsec 1.6240 #GCMRL# 45 dt 84.317460 rms 0.785 0.123% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4810 tsec 1.7850 #GCMRL# 46 dt 84.317460 rms 0.785 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5080 tsec 1.8280 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.784174) vs oldopt=(dt=25.92,rms=0.784223) #GCMRL# 47 dt 36.288000 rms 0.784 0.042% neg 0 invalid 762 tFOTS 4.0150 tGradient 1.5330 tsec 5.8530 #GCAMreg# pass 0 level1 4 level2 1 tsec 66.51 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.784765 #GCMRL# 49 dt 0.000000 rms 0.784 0.074% neg 0 invalid 762 tFOTS 4.1560 tGradient 1.5600 tsec 6.0130 setting smoothness cost coefficient to 2.353 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.811953 #GCMRL# 51 dt 0.000000 rms 0.811 0.069% neg 0 invalid 762 tFOTS 3.5520 tGradient 1.4150 tsec 5.2620 #GCAMreg# pass 0 level1 3 level2 1 tsec 12.789 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.811953 #GCMRL# 53 dt 0.000000 rms 0.811 0.069% neg 0 invalid 762 tFOTS 3.5480 tGradient 1.4700 tsec 5.3500 setting smoothness cost coefficient to 8.000 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.894627 #FOTS# QuadFit found better minimum quadopt=(dt=2.33058,rms=0.870822) vs oldopt=(dt=2.88,rms=0.872079) #GCMRL# 55 dt 2.330579 rms 0.871 2.661% neg 0 invalid 762 tFOTS 3.8130 tGradient 1.3920 tsec 5.5040 #FOTS# QuadFit found better minimum quadopt=(dt=1.52778,rms=0.868299) vs oldopt=(dt=0.72,rms=0.869009) #GCMRL# 56 dt 1.527778 rms 0.868 0.290% neg 0 invalid 762 tFOTS 4.0310 tGradient 1.2760 tsec 5.6160 #FOTS# QuadFit found better minimum quadopt=(dt=0.7,rms=0.86803) vs oldopt=(dt=0.72,rms=0.86803) #GCMRL# 57 dt 0.700000 rms 0.868 0.000% neg 0 invalid 762 tFOTS 3.8180 tGradient 1.3670 tsec 5.5260 #GCAMreg# pass 0 level1 2 level2 1 tsec 20.378 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.868527 #GCMRL# 59 dt 0.000000 rms 0.868 0.057% neg 0 invalid 762 tFOTS 3.6340 tGradient 1.3700 tsec 5.3160 setting smoothness cost coefficient to 20.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.934705 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.931761) vs oldopt=(dt=0.32,rms=0.93208) #GCMRL# 61 dt 0.448000 rms 0.932 0.315% neg 0 invalid 762 tFOTS 3.7540 tGradient 1.4350 tsec 5.4780 #FOTS# QuadFit found better minimum quadopt=(dt=0.892794,rms=0.924268) vs oldopt=(dt=1.28,rms=0.92531) #GCMRL# 62 dt 0.892794 rms 0.924 0.804% neg 0 invalid 762 tFOTS 3.8660 tGradient 1.3490 tsec 5.5080 #FOTS# QuadFit found better minimum quadopt=(dt=0.192,rms=0.922634) vs oldopt=(dt=0.32,rms=0.923156) #GCMRL# 63 dt 0.192000 rms 0.923 0.000% neg 0 invalid 762 tFOTS 3.7710 tGradient 1.3350 tsec 5.4140 #GCMRL# 64 dt 0.192000 rms 0.922 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2520 tsec 1.5840 #GCMRL# 65 dt 0.192000 rms 0.922 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3120 tsec 1.6000 #GCMRL# 66 dt 0.192000 rms 0.920 0.189% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2960 tsec 1.6040 #GCMRL# 67 dt 0.192000 rms 0.917 0.299% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3220 tsec 1.6320 #GCMRL# 68 dt 0.192000 rms 0.915 0.213% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2090 tsec 1.4920 #GCMRL# 69 dt 0.192000 rms 0.915 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2370 tsec 1.5580 #GCMRL# 70 dt 0.192000 rms 0.915 -0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3270 tsec 1.9050 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.914462) vs oldopt=(dt=0.08,rms=0.914476) #GCMRL# 71 dt 0.112000 rms 0.914 0.011% neg 0 invalid 762 tFOTS 3.8920 tGradient 1.2330 tsec 5.4470 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.913894) vs oldopt=(dt=0.32,rms=0.913997) #GCMRL# 72 dt 0.448000 rms 0.914 0.062% neg 0 invalid 762 tFOTS 3.8160 tGradient 1.2510 tsec 5.3770 #GCMRL# 73 dt 1.280000 rms 0.910 0.380% neg 0 invalid 762 tFOTS 4.0670 tGradient 1.2650 tsec 5.6480 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.910138) vs oldopt=(dt=0.08,rms=0.910172) #GCMRL# 74 dt 0.112000 rms 0.910 0.000% neg 0 invalid 762 tFOTS 3.9900 tGradient 1.3320 tsec 5.6540 #GCAMreg# pass 0 level1 1 level2 1 tsec 53.669 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.910639 #FOTS# QuadFit found better minimum quadopt=(dt=0.096,rms=0.910024) vs oldopt=(dt=0.08,rms=0.910029) #GCMRL# 76 dt 0.096000 rms 0.910 0.068% neg 0 invalid 762 tFOTS 4.0570 tGradient 1.2720 tsec 5.6360 #FOTS# QuadFit found better minimum quadopt=(dt=0.028,rms=0.910019) vs oldopt=(dt=0.02,rms=0.91002) #GCMRL# 77 dt 0.028000 rms 0.910 0.000% neg 0 invalid 762 tFOTS 3.8790 tGradient 1.2830 tsec 5.4800 resetting metric properties... setting smoothness cost coefficient to 40.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.874462 #GCMRL# 79 dt 0.320000 rms 0.864 1.174% neg 0 invalid 762 tFOTS 4.0560 tGradient 0.9340 tsec 5.2990 #FOTS# QuadFit found better minimum quadopt=(dt=0.028,rms=0.863738) vs oldopt=(dt=0.02,rms=0.863795) #GCMRL# 80 dt 0.028000 rms 0.864 0.000% neg 0 invalid 762 tFOTS 3.8470 tGradient 0.9020 tsec 5.0610 #GCAMreg# pass 0 level1 0 level2 1 tsec 13.694 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.86424 #FOTS# QuadFit found better minimum quadopt=(dt=0.016,rms=0.863666) vs oldopt=(dt=0.02,rms=0.863674) #GCMRL# 82 dt 0.016000 rms 0.864 0.066% neg 0 invalid 762 tFOTS 3.7900 tGradient 0.9380 tsec 5.0380 #FOTS# QuadFit found better minimum quadopt=(dt=0,rms=0.863664) vs oldopt=(dt=0,rms=0.863664) #GCMRL# 83 dt 0.050000 rms 0.864 0.000% neg 0 invalid 762 tFOTS 3.7010 tGradient 0.9200 tsec 4.9500 GCAMregister done in 5.90453 min Starting GCAmapRenormalizeWithAlignment() without scales renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10253 (16) mri peak = 0.07871 (16) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (879 voxels, overlap=0.677) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (879 voxels, peak = 11), gca=11.3 gca peak = 0.17690 (16) mri peak = 0.09262 (25) Right_Lateral_Ventricle (43): linear fit = 1.47 x + 0.0 (960 voxels, overlap=0.540) Right_Lateral_Ventricle (43): linear fit = 1.47 x + 0.0 (960 voxels, peak = 23), gca=23.4 gca peak = 0.28275 (96) mri peak = 0.08602 (94) Right_Pallidum (52): linear fit = 0.96 x + 0.0 (1050 voxels, overlap=1.002) Right_Pallidum (52): linear fit = 0.96 x + 0.0 (1050 voxels, peak = 93), gca=92.6 gca peak = 0.18948 (93) mri peak = 0.05556 (100) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (770 voxels, overlap=0.976) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (770 voxels, peak = 98), gca=98.1 gca peak = 0.20755 (55) mri peak = 0.13482 (64) Right_Hippocampus (53): linear fit = 1.14 x + 0.0 (806 voxels, overlap=0.367) Right_Hippocampus (53): linear fit = 1.14 x + 0.0 (806 voxels, peak = 63), gca=63.0 gca peak = 0.31831 (58) mri peak = 0.08829 (55) Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (698 voxels, overlap=0.980) Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (698 voxels, peak = 57), gca=57.1 gca peak = 0.11957 (102) mri peak = 0.08266 (105) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (60678 voxels, overlap=0.643) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (60678 voxels, peak = 108), gca=107.6 gca peak = 0.11429 (102) mri peak = 0.07551 (105) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (64805 voxels, overlap=0.663) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (64805 voxels, peak = 108), gca=107.6 gca peak = 0.14521 (59) mri peak = 0.02843 (47) Left_Cerebral_Cortex (3): linear fit = 1.51 x + 0.0 (11502 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.51 x + 0.0 (11502 voxels, peak = 89), gca=89.4 gca peak = 0.14336 (58) mri peak = 0.03379 (57) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (13028 voxels, overlap=0.585) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (13028 voxels, peak = 59), gca=59.4 gca peak = 0.13305 (70) mri peak = 0.09803 (100) Right_Caudate (50): linear fit = 1.38 x + 0.0 (425 voxels, overlap=0.025) Right_Caudate (50): linear fit = 1.38 x + 0.0 (425 voxels, peak = 96), gca=96.2 gca peak = 0.15761 (71) mri peak = 0.08714 (80) Left_Caudate (11): linear fit = 1.03 x + 0.0 (964 voxels, overlap=0.975) Left_Caudate (11): linear fit = 1.03 x + 0.0 (964 voxels, peak = 73), gca=73.5 gca peak = 0.13537 (57) mri peak = 0.03578 (51) Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (11511 voxels, overlap=0.676) Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (11511 voxels, peak = 54), gca=53.9 gca peak = 0.13487 (56) mri peak = 0.03249 (42) Right_Cerebellum_Cortex (47): linear fit = 0.82 x + 0.0 (14649 voxels, overlap=0.121) Right_Cerebellum_Cortex (47): linear fit = 0.82 x + 0.0 (14649 voxels, peak = 46), gca=46.2 gca peak = 0.19040 (84) mri peak = 0.07121 (85) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (8001 voxels, overlap=0.939) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (8001 voxels, peak = 86), gca=86.1 gca peak = 0.18871 (83) mri peak = 0.06800 (81) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (7287 voxels, overlap=0.984) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (7287 voxels, peak = 81), gca=80.9 gca peak = 0.24248 (57) mri peak = 0.10864 (58) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (388 voxels, overlap=0.946) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (388 voxels, peak = 60), gca=59.6 gca peak = 0.35833 (56) mri peak = 0.10417 (68) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (480 voxels, overlap=0.195) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (480 voxels, peak = 65), gca=64.7 gca peak = 0.12897 (85) mri peak = 0.07777 (93) Left_Thalamus (10): linear fit = 1.09 x + 0.0 (5836 voxels, overlap=0.430) Left_Thalamus (10): linear fit = 1.09 x + 0.0 (5836 voxels, peak = 92), gca=92.2 gca peak = 0.13127 (83) mri peak = 0.11430 (90) Right_Thalamus (49): linear fit = 1.08 x + 0.0 (4232 voxels, overlap=0.542) Right_Thalamus (49): linear fit = 1.08 x + 0.0 (4232 voxels, peak = 89), gca=89.2 gca peak = 0.12974 (78) mri peak = 0.05151 (86) Left_Putamen (12): linear fit = 1.10 x + 0.0 (1809 voxels, overlap=0.582) Left_Putamen (12): linear fit = 1.10 x + 0.0 (1809 voxels, peak = 85), gca=85.4 gca peak = 0.17796 (79) mri peak = 0.06985 (88) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2498 voxels, overlap=0.283) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2498 voxels, peak = 90), gca=90.5 gca peak = 0.10999 (80) mri peak = 0.08852 (85) Brain_Stem (16): linear fit = 1.10 x + 0.0 (12721 voxels, overlap=0.415) Brain_Stem (16): linear fit = 1.10 x + 0.0 (12721 voxels, peak = 88), gca=87.6 gca peak = 0.13215 (88) mri peak = 0.10568 (89) Right_VentralDC (60): linear fit = 1.02 x + 0.0 (1221 voxels, overlap=0.707) Right_VentralDC (60): linear fit = 1.02 x + 0.0 (1221 voxels, peak = 90), gca=90.2 gca peak = 0.11941 (89) mri peak = 0.08000 (95) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1453 voxels, overlap=0.519) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1453 voxels, peak = 97), gca=97.5 gca peak = 0.20775 (25) mri peak = 0.36364 (29) gca peak = 0.13297 (21) mri peak = 0.17587 (10) Fourth_Ventricle (15): linear fit = 0.57 x + 0.0 (452 voxels, overlap=0.282) Fourth_Ventricle (15): linear fit = 0.57 x + 0.0 (452 voxels, peak = 12), gca=12.1 gca peak Unknown = 0.94777 ( 0) gca peak Left_Cerebral_Cortex = 0.14521 (59) gca peak Left_Inf_Lat_Vent = 0.19087 (28) gca peak Third_Ventricle = 0.20775 (25) gca peak Fourth_Ventricle = 0.13297 (21) gca peak CSF = 0.16821 (33) gca peak Left_Accumbens_area = 0.32850 (63) gca peak Left_undetermined = 0.98480 (28) gca peak Left_vessel = 0.40887 (53) gca peak Left_choroid_plexus = 0.10898 (46) gca peak Right_Inf_Lat_Vent = 0.17798 (26) gca peak Right_Accumbens_area = 0.30137 (64) gca peak Right_vessel = 0.47828 (52) gca peak Right_choroid_plexus = 0.11612 (45) gca peak Fifth_Ventricle = 0.59466 (35) gca peak WM_hypointensities = 0.10053 (78) gca peak non_WM_hypointensities = 0.07253 (60) gca peak Optic_Chiasm = 0.25330 (73) not using caudate to estimate GM means setting label Left_Cerebral_Cortex based on Right_Cerebral_Cortex = 1.02 x + 0: 59 estimating mean gm scale to be 1.06 x + 0.0 estimating mean wm scale to be 1.05 x + 0.0 estimating mean csf scale to be 1.09 x + 0.0 saving intensity scales to talairach.label_intensities.txt GCAmapRenormalizeWithAlignment() took 2.93585 min noneg pre Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.877603 #FOTS# QuadFit found better minimum quadopt=(dt=221.952,rms=0.861306) vs oldopt=(dt=369.92,rms=0.866262) #GCMRL# 85 dt 221.952000 rms 0.861 1.857% neg 0 invalid 762 tFOTS 4.2320 tGradient 1.6950 tsec 6.2400 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.852739) vs oldopt=(dt=369.92,rms=0.853288) #GCMRL# 86 dt 295.936000 rms 0.853 0.995% neg 0 invalid 762 tFOTS 4.2330 tGradient 1.7220 tsec 6.2830 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.848963) vs oldopt=(dt=92.48,rms=0.849123) #GCMRL# 87 dt 110.976000 rms 0.849 0.443% neg 0 invalid 762 tFOTS 4.2690 tGradient 1.8070 tsec 6.3980 #FOTS# QuadFit found better minimum quadopt=(dt=1183.74,rms=0.840412) vs oldopt=(dt=1479.68,rms=0.841468) #GCMRL# 88 dt 1183.744000 rms 0.840 1.007% neg 0 invalid 762 tFOTS 4.4300 tGradient 1.6590 tsec 6.4130 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.835676) vs oldopt=(dt=92.48,rms=0.835834) #GCMRL# 89 dt 110.976000 rms 0.836 0.564% neg 0 invalid 762 tFOTS 4.3230 tGradient 1.6370 tsec 6.2850 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.832241) vs oldopt=(dt=369.92,rms=0.832562) #GCMRL# 90 dt 517.888000 rms 0.832 0.411% neg 0 invalid 762 tFOTS 4.3470 tGradient 1.6430 tsec 6.3120 #GCMRL# 91 dt 92.480000 rms 0.831 0.173% neg 0 invalid 762 tFOTS 4.1220 tGradient 1.7810 tsec 6.2050 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.829316) vs oldopt=(dt=369.92,rms=0.829494) #GCMRL# 92 dt 517.888000 rms 0.829 0.179% neg 0 invalid 762 tFOTS 4.2950 tGradient 1.7180 tsec 6.3160 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.827554) vs oldopt=(dt=369.92,rms=0.827848) #GCMRL# 93 dt 295.936000 rms 0.828 0.212% neg 0 invalid 762 tFOTS 4.2970 tGradient 1.5690 tsec 6.1820 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.826693) vs oldopt=(dt=92.48,rms=0.826802) #GCMRL# 94 dt 129.472000 rms 0.827 0.104% neg 0 invalid 762 tFOTS 4.1240 tGradient 1.8420 tsec 6.2580 #GCMRL# 95 dt 1479.680000 rms 0.824 0.357% neg 0 invalid 762 tFOTS 4.3530 tGradient 1.6950 tsec 6.3650 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.821238) vs oldopt=(dt=92.48,rms=0.821301) #GCMRL# 96 dt 110.976000 rms 0.821 0.304% neg 0 invalid 762 tFOTS 4.2380 tGradient 1.7010 tsec 6.2410 #FOTS# QuadFit found better minimum quadopt=(dt=443.904,rms=0.820237) vs oldopt=(dt=369.92,rms=0.820275) #GCMRL# 97 dt 443.904000 rms 0.820 0.122% neg 0 invalid 762 tFOTS 4.5490 tGradient 1.5340 tsec 6.4000 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.819584) vs oldopt=(dt=92.48,rms=0.819639) #GCMRL# 98 dt 129.472000 rms 0.820 0.080% neg 0 invalid 762 tFOTS 4.3740 tGradient 1.7860 tsec 6.4720 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.818704) vs oldopt=(dt=369.92,rms=0.818788) #GCMRL# 99 dt 517.888000 rms 0.819 0.107% neg 0 invalid 762 tFOTS 4.5490 tGradient 1.7730 tsec 6.6350 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.817914) vs oldopt=(dt=92.48,rms=0.817992) #GCMRL# 100 dt 129.472000 rms 0.818 0.097% neg 0 invalid 762 tFOTS 4.2930 tGradient 1.7720 tsec 6.3640 #GCMRL# 101 dt 369.920000 rms 0.817 0.071% neg 0 invalid 762 tFOTS 4.6820 tGradient 1.6490 tsec 6.6460 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.816669) vs oldopt=(dt=92.48,rms=0.816752) #GCMRL# 102 dt 129.472000 rms 0.817 0.082% neg 0 invalid 762 tFOTS 4.2970 tGradient 1.8780 tsec 6.4930 #GCMRL# 103 dt 369.920000 rms 0.816 0.061% neg 0 invalid 762 tFOTS 4.4820 tGradient 1.8710 tsec 6.6580 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.815552) vs oldopt=(dt=92.48,rms=0.815638) #GCMRL# 104 dt 129.472000 rms 0.816 0.075% neg 0 invalid 762 tFOTS 4.2470 tGradient 1.8600 tsec 6.4280 #FOTS# QuadFit found better minimum quadopt=(dt=443.904,rms=0.815043) vs oldopt=(dt=369.92,rms=0.815044) #GCMRL# 105 dt 443.904000 rms 0.815 0.062% neg 0 invalid 762 tFOTS 4.5970 tGradient 1.7970 tsec 6.7020 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.814375) vs oldopt=(dt=92.48,rms=0.814449) #GCMRL# 106 dt 129.472000 rms 0.814 0.082% neg 0 invalid 762 tFOTS 4.4500 tGradient 1.9090 tsec 6.6840 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.814013) vs oldopt=(dt=369.92,rms=0.814034) #GCMRL# 107 dt 295.936000 rms 0.814 0.000% neg 0 invalid 762 tFOTS 4.5580 tGradient 1.8090 tsec 6.7150 #GCMRL# 108 dt 295.936000 rms 0.814 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6200 tsec 1.9370 #GCMRL# 109 dt 295.936000 rms 0.813 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6170 tsec 1.9290 #GCMRL# 110 dt 295.936000 rms 0.811 0.224% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6570 tsec 1.9720 #GCMRL# 111 dt 295.936000 rms 0.809 0.198% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6970 tsec 2.0230 #GCMRL# 112 dt 295.936000 rms 0.808 0.190% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6320 tsec 1.9430 #GCMRL# 113 dt 295.936000 rms 0.805 0.300% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6500 tsec 1.9660 #GCMRL# 114 dt 295.936000 rms 0.803 0.245% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6650 tsec 1.9920 #GCMRL# 115 dt 295.936000 rms 0.802 0.163% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6750 tsec 1.9880 #GCMRL# 116 dt 295.936000 rms 0.800 0.271% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5740 tsec 1.8780 #GCMRL# 117 dt 295.936000 rms 0.798 0.234% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6890 tsec 1.9900 #GCMRL# 118 dt 295.936000 rms 0.797 0.129% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6040 tsec 1.9090 #GCMRL# 119 dt 295.936000 rms 0.795 0.195% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5880 tsec 1.8920 #GCMRL# 120 dt 295.936000 rms 0.794 0.202% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5740 tsec 1.8760 #GCMRL# 121 dt 295.936000 rms 0.793 0.144% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6680 tsec 1.9750 #GCMRL# 122 dt 295.936000 rms 0.791 0.163% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6500 tsec 1.9560 #GCMRL# 123 dt 295.936000 rms 0.790 0.117% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6850 tsec 1.9860 #GCMRL# 124 dt 295.936000 rms 0.790 0.103% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6320 tsec 1.9390 #GCMRL# 125 dt 295.936000 rms 0.789 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6550 tsec 1.9620 #GCMRL# 126 dt 295.936000 rms 0.788 0.069% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6620 tsec 1.9780 #GCMRL# 127 dt 295.936000 rms 0.787 0.074% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6460 tsec 1.9640 #GCMRL# 128 dt 295.936000 rms 0.787 0.092% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7400 tsec 2.0520 #GCMRL# 129 dt 295.936000 rms 0.786 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7040 tsec 2.0080 #GCMRL# 130 dt 295.936000 rms 0.786 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7220 tsec 2.0390 #GCMRL# 131 dt 295.936000 rms 0.785 0.100% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7400 tsec 2.0450 #GCMRL# 132 dt 295.936000 rms 0.785 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7740 tsec 2.0840 #GCMRL# 133 dt 295.936000 rms 0.784 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.7270 tsec 2.0370 #GCMRL# 134 dt 295.936000 rms 0.784 0.081% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6640 tsec 1.9810 #GCMRL# 135 dt 295.936000 rms 0.784 -0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.6550 tsec 2.2350 #GCMRL# 136 dt 1.445000 rms 0.784 0.000% neg 0 invalid 762 tFOTS 4.4570 tGradient 1.6470 tsec 6.4180 #GCAMreg# pass 0 level1 5 level2 1 tsec 218.21 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.78406 #FOTS# QuadFit found better minimum quadopt=(dt=73.984,rms=0.782916) vs oldopt=(dt=92.48,rms=0.78292) #GCMRL# 138 dt 73.984000 rms 0.783 0.146% neg 0 invalid 762 tFOTS 4.6650 tGradient 1.6460 tsec 6.6340 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.78286) vs oldopt=(dt=23.12,rms=0.782865) #GCMRL# 139 dt 32.368000 rms 0.783 0.000% neg 0 invalid 762 tFOTS 4.4990 tGradient 1.7450 tsec 6.5830 #GCMRL# 140 dt 32.368000 rms 0.783 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.9980 tsec 2.3000 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.785299 #FOTS# QuadFit found better minimum quadopt=(dt=99.1813,rms=0.780859) vs oldopt=(dt=103.68,rms=0.780876) #GCMRL# 142 dt 99.181287 rms 0.781 0.565% neg 0 invalid 762 tFOTS 4.0570 tGradient 1.4660 tsec 5.8460 #FOTS# QuadFit found better minimum quadopt=(dt=104.809,rms=0.771501) vs oldopt=(dt=103.68,rms=0.771504) #GCMRL# 143 dt 104.809147 rms 0.772 1.198% neg 0 invalid 762 tFOTS 4.3300 tGradient 1.5500 tsec 6.2030 #GCMRL# 144 dt 25.920000 rms 0.770 0.256% neg 0 invalid 762 tFOTS 3.8010 tGradient 1.4700 tsec 5.5950 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.765408) vs oldopt=(dt=103.68,rms=0.766072) #GCMRL# 145 dt 145.152000 rms 0.765 0.536% neg 0 invalid 762 tFOTS 3.9640 tGradient 1.4300 tsec 5.7050 #FOTS# QuadFit found better minimum quadopt=(dt=101.805,rms=0.758199) vs oldopt=(dt=103.68,rms=0.758201) #GCMRL# 146 dt 101.804651 rms 0.758 0.942% neg 0 invalid 762 tFOTS 4.3660 tGradient 1.3710 tsec 6.0490 #FOTS# QuadFit found better minimum quadopt=(dt=21.6403,rms=0.757063) vs oldopt=(dt=25.92,rms=0.757103) #GCMRL# 147 dt 21.640288 rms 0.757 0.150% neg 0 invalid 762 tFOTS 3.8810 tGradient 1.3760 tsec 5.5830 #GCMRL# 148 dt 25.920000 rms 0.756 0.078% neg 0 invalid 762 tFOTS 3.5730 tGradient 1.5270 tsec 5.4250 #GCMRL# 149 dt 6.480000 rms 0.756 0.000% neg 0 invalid 762 tFOTS 3.5790 tGradient 1.4320 tsec 5.3390 #GCMRL# 150 dt 0.810000 rms 0.756 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4840 tsec 2.3880 #GCMRL# 151 dt 0.405000 rms 0.756 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4820 tsec 2.0910 #GCMRL# 152 dt 0.050625 rms 0.756 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.4960 tsec 2.4930 #FOTS# QuadFit found better minimum quadopt=(dt=0.0354375,rms=0.75622) vs oldopt=(dt=0.0253125,rms=0.75622) #GCMRL# 153 dt 0.035437 rms 0.756 0.000% neg 0 invalid 762 tFOTS 2.5120 tGradient 1.4630 tsec 4.2870 #FOTS# QuadFit found better minimum quadopt=(dt=0.00885937,rms=0.75622) vs oldopt=(dt=0.00632812,rms=0.75622) #GCAMreg# pass 0 level1 4 level2 1 tsec 62.767 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.756834 #FOTS# QuadFit found better minimum quadopt=(dt=87.3037,rms=0.752425) vs oldopt=(dt=103.68,rms=0.752562) #GCMRL# 155 dt 87.303730 rms 0.752 0.583% neg 0 invalid 762 tFOTS 4.2300 tGradient 1.5050 tsec 6.0390 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.750665) vs oldopt=(dt=103.68,rms=0.751138) #GCMRL# 156 dt 62.208000 rms 0.751 0.234% neg 0 invalid 762 tFOTS 4.0200 tGradient 1.4130 tsec 5.7490 #FOTS# QuadFit found better minimum quadopt=(dt=87.6262,rms=0.747777) vs oldopt=(dt=103.68,rms=0.747885) #GCMRL# 157 dt 87.626168 rms 0.748 0.385% neg 0 invalid 762 tFOTS 4.4860 tGradient 1.4300 tsec 6.2180 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.746577) vs oldopt=(dt=25.92,rms=0.746674) #GCMRL# 158 dt 36.288000 rms 0.747 0.160% neg 0 invalid 762 tFOTS 4.0740 tGradient 1.4120 tsec 5.7930 #GCMRL# 159 dt 414.720000 rms 0.740 0.831% neg 0 invalid 762 tFOTS 4.0370 tGradient 1.4260 tsec 5.7630 #FOTS# QuadFit found better minimum quadopt=(dt=30.4,rms=0.736772) vs oldopt=(dt=25.92,rms=0.736815) #GCMRL# 160 dt 30.400000 rms 0.737 0.487% neg 0 invalid 762 tFOTS 3.8920 tGradient 1.4050 tsec 5.6030 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.734034) vs oldopt=(dt=103.68,rms=0.734773) #GCMRL# 161 dt 145.152000 rms 0.734 0.372% neg 0 invalid 762 tFOTS 3.8070 tGradient 1.6010 tsec 5.7300 #GCMRL# 162 dt 414.720000 rms 0.730 0.613% neg 0 invalid 762 tFOTS 4.3670 tGradient 1.4370 tsec 6.1230 #FOTS# QuadFit found better minimum quadopt=(dt=49.7778,rms=0.726906) vs oldopt=(dt=25.92,rms=0.727277) #GCMRL# 163 dt 49.777778 rms 0.727 0.360% neg 0 invalid 762 tFOTS 3.8330 tGradient 1.3480 tsec 5.5010 #FOTS# QuadFit found better minimum quadopt=(dt=70.0235,rms=0.725344) vs oldopt=(dt=103.68,rms=0.725707) #GCMRL# 164 dt 70.023529 rms 0.725 0.215% neg 0 invalid 762 tFOTS 4.2990 tGradient 1.3920 tsec 6.0050 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.724838) vs oldopt=(dt=25.92,rms=0.724863) #GCMRL# 165 dt 36.288000 rms 0.725 0.070% neg 0 invalid 762 tFOTS 3.5280 tGradient 1.3540 tsec 5.2020 #GCMRL# 166 dt 414.720000 rms 0.721 0.462% neg 0 invalid 762 tFOTS 4.0400 tGradient 1.4310 tsec 5.8010 #FOTS# QuadFit found better minimum quadopt=(dt=2.268,rms=0.721091) vs oldopt=(dt=1.62,rms=0.721202) #GCMRL# 167 dt 2.268000 rms 0.721 0.056% neg 0 invalid 762 tFOTS 3.2710 tGradient 1.5490 tsec 5.1420 #FOTS# QuadFit found better minimum quadopt=(dt=0.567,rms=0.721001) vs oldopt=(dt=0.405,rms=0.721027) #GCMRL# 168 dt 0.567000 rms 0.721 0.000% neg 0 invalid 762 tFOTS 3.0690 tGradient 1.4950 tsec 4.9010 #GCMRL# 169 dt 0.283500 rms 0.721 0.006% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5100 tsec 2.1480 #GCMRL# 170 dt 0.070875 rms 0.721 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5130 tsec 2.2920 #GCMRL# 171 dt 0.035437 rms 0.721 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5490 tsec 2.2290 #FOTS# QuadFit found better minimum quadopt=(dt=0.00885937,rms=0.720939) vs oldopt=(dt=0.00632812,rms=0.72094) setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.72846 #FOTS# QuadFit found better minimum quadopt=(dt=0.000683594,rms=0.727827) vs oldopt=(dt=0.000488281,rms=0.727827) #GCMRL# 173 dt 0.000684 rms 0.728 0.087% neg 0 invalid 762 tFOTS 3.2370 tGradient 1.3970 tsec 4.9430 #GCMRL# 174 dt 0.250000 rms 0.728 0.000% neg 0 invalid 762 tFOTS 1.7110 tGradient 1.3450 tsec 3.6220 #GCMRL# 175 dt 0.000122 rms 0.728 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3340 tsec 3.4160 #GCMRL# 176 dt 0.000031 rms 0.728 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3270 tsec 2.0950 #GCAMreg# pass 0 level1 3 level2 1 tsec 17.764 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.72846 #GCMRL# 178 dt 0.000000 rms 0.728 0.087% neg 0 invalid 762 tFOTS 1.7210 tGradient 1.3500 tsec 3.3810 #GCMRL# 179 dt 0.250000 rms 0.728 0.000% neg 0 invalid 762 tFOTS 1.7250 tGradient 1.3390 tsec 3.6420 #GCMRL# 180 dt 0.000061 rms 0.728 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3330 tsec 3.6020 #GCMRL# 181 dt 0.000002 rms 0.728 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3550 tsec 2.5830 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.750391 #FOTS# QuadFit found better minimum quadopt=(dt=4.032,rms=0.729611) vs oldopt=(dt=2.88,rms=0.735142) #GCMRL# 183 dt 4.032000 rms 0.730 2.769% neg 0 invalid 762 tFOTS 3.7730 tGradient 1.3480 tsec 5.4480 #FOTS# QuadFit found better minimum quadopt=(dt=4.032,rms=0.714579) vs oldopt=(dt=2.88,rms=0.718781) #GCMRL# 184 dt 4.032000 rms 0.715 2.060% neg 0 invalid 762 tFOTS 3.8600 tGradient 1.3590 tsec 5.5360 #FOTS# QuadFit found better minimum quadopt=(dt=4.032,rms=0.702916) vs oldopt=(dt=2.88,rms=0.706193) #GCMRL# 185 dt 4.032000 rms 0.703 1.632% neg 0 invalid 762 tFOTS 3.7880 tGradient 1.2540 tsec 5.3620 #GCMRL# 186 dt 11.520000 rms 0.678 3.607% neg 0 invalid 762 tFOTS 4.1130 tGradient 1.2990 tsec 5.7290 #FOTS# QuadFit found better minimum quadopt=(dt=4.032,rms=0.673575) vs oldopt=(dt=2.88,rms=0.674707) #GCMRL# 187 dt 4.032000 rms 0.674 0.588% neg 0 invalid 762 tFOTS 3.8110 tGradient 1.1840 tsec 5.3180 #FOTS# QuadFit found better minimum quadopt=(dt=16.128,rms=0.65998) vs oldopt=(dt=11.52,rms=0.663745) #GCMRL# 188 dt 16.128000 rms 0.660 2.018% neg 0 invalid 762 tFOTS 4.0640 tGradient 1.2740 tsec 5.6440 #GCMRL# 189 dt 11.520000 rms 0.656 0.591% neg 0 invalid 762 tFOTS 4.0870 tGradient 1.3150 tsec 5.7200 #FOTS# QuadFit found better minimum quadopt=(dt=1.008,rms=0.655695) vs oldopt=(dt=0.72,rms=0.655804) #GCMRL# 190 dt 1.008000 rms 0.656 0.058% neg 0 invalid 762 tFOTS 3.4950 tGradient 1.3400 tsec 5.1480 #FOTS# QuadFit found better minimum quadopt=(dt=4.032,rms=0.654376) vs oldopt=(dt=2.88,rms=0.654729) #GCMRL# 191 dt 4.032000 rms 0.654 0.201% neg 0 invalid 762 tFOTS 3.8090 tGradient 1.1720 tsec 5.2910 #GCMRL# 192 dt 11.520000 rms 0.652 0.393% neg 0 invalid 762 tFOTS 4.0440 tGradient 1.2170 tsec 5.5740 #FOTS# QuadFit found better minimum quadopt=(dt=3.456,rms=0.651164) vs oldopt=(dt=2.88,rms=0.651263) #GCMRL# 193 dt 3.456000 rms 0.651 0.099% neg 0 invalid 762 tFOTS 3.8040 tGradient 1.2240 tsec 5.3570 #FOTS# QuadFit found better minimum quadopt=(dt=0.864,rms=0.650998) vs oldopt=(dt=0.72,rms=0.651026) #GCMRL# 194 dt 0.864000 rms 0.651 0.000% neg 0 invalid 762 tFOTS 3.5970 tGradient 1.1770 tsec 5.0960 #GCMRL# 195 dt 0.108000 rms 0.651 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1930 tsec 2.1020 #GCMRL# 196 dt 0.108000 rms 0.651 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2660 tsec 1.7280 #GCMRL# 197 dt 0.003375 rms 0.651 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2450 tsec 2.4590 #GCAMreg# pass 0 level1 2 level2 1 tsec 76.85 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.651551 #GCMRL# 199 dt 0.000000 rms 0.651 0.092% neg 0 invalid 762 tFOTS 3.4940 tGradient 1.2240 tsec 5.0220 #GCMRL# 200 dt 0.150000 rms 0.651 0.000% neg 0 invalid 762 tFOTS 3.5300 tGradient 1.3110 tsec 5.4030 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.694169 #GCMRL# 202 dt 0.000000 rms 0.694 0.081% neg 0 invalid 762 tFOTS 3.5380 tGradient 1.1950 tsec 5.0430 #GCMRL# 203 dt 0.100000 rms 0.694 0.000% neg 0 invalid 762 tFOTS 3.5440 tGradient 1.2140 tsec 5.3140 #GCAMreg# pass 0 level1 1 level2 1 tsec 13.878 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.694169 #GCMRL# 205 dt 0.000000 rms 0.694 0.081% neg 0 invalid 762 tFOTS 3.4850 tGradient 1.1890 tsec 4.9840 #GCMRL# 206 dt 0.100000 rms 0.694 0.000% neg 0 invalid 762 tFOTS 3.5270 tGradient 1.3210 tsec 5.3990 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.621518 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.615144) vs oldopt=(dt=0.08,rms=0.616775) #GCMRL# 208 dt 0.112000 rms 0.615 1.026% neg 0 invalid 762 tFOTS 3.3180 tGradient 0.7840 tsec 4.3810 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.610376) vs oldopt=(dt=0.08,rms=0.611731) #GCMRL# 209 dt 0.112000 rms 0.610 0.775% neg 0 invalid 762 tFOTS 3.5010 tGradient 0.9320 tsec 4.7510 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.606443) vs oldopt=(dt=0.08,rms=0.607564) #GCMRL# 210 dt 0.112000 rms 0.606 0.644% neg 0 invalid 762 tFOTS 3.4880 tGradient 0.7600 tsec 4.5560 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.603192) vs oldopt=(dt=0.08,rms=0.604113) #GCMRL# 211 dt 0.112000 rms 0.603 0.536% neg 0 invalid 762 tFOTS 3.5270 tGradient 0.8260 tsec 4.6810 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.60052) vs oldopt=(dt=0.08,rms=0.601285) #GCMRL# 212 dt 0.112000 rms 0.601 0.443% neg 0 invalid 762 tFOTS 3.4760 tGradient 0.7900 tsec 4.5730 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.598286) vs oldopt=(dt=0.08,rms=0.598918) #GCMRL# 213 dt 0.112000 rms 0.598 0.372% neg 0 invalid 762 tFOTS 3.3180 tGradient 0.7350 tsec 4.3470 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.596418) vs oldopt=(dt=0.08,rms=0.596949) #GCMRL# 214 dt 0.112000 rms 0.596 0.312% neg 0 invalid 762 tFOTS 3.4740 tGradient 0.7940 tsec 4.5870 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.594882) vs oldopt=(dt=0.08,rms=0.595323) #GCMRL# 215 dt 0.112000 rms 0.595 0.257% neg 0 invalid 762 tFOTS 3.4630 tGradient 0.8420 tsec 4.6170 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.593534) vs oldopt=(dt=0.08,rms=0.593912) #GCMRL# 216 dt 0.112000 rms 0.594 0.227% neg 0 invalid 762 tFOTS 3.4890 tGradient 0.7380 tsec 4.5410 #FOTS# QuadFit found better minimum quadopt=(dt=0.196429,rms=0.591601) vs oldopt=(dt=0.08,rms=0.592737) #GCMRL# 217 dt 0.196429 rms 0.592 0.326% neg 0 invalid 762 tFOTS 3.4520 tGradient 0.7810 tsec 4.5590 #FOTS# QuadFit found better minimum quadopt=(dt=0.125,rms=0.590651) vs oldopt=(dt=0.08,rms=0.590989) #GCMRL# 218 dt 0.125000 rms 0.591 0.161% neg 0 invalid 762 tFOTS 3.5640 tGradient 0.8460 tsec 4.7180 #FOTS# QuadFit found better minimum quadopt=(dt=0.1125,rms=0.589896) vs oldopt=(dt=0.08,rms=0.590112) #GCMRL# 219 dt 0.112500 rms 0.590 0.128% neg 0 invalid 762 tFOTS 3.5510 tGradient 0.8250 tsec 4.6860 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.589252) vs oldopt=(dt=0.08,rms=0.589432) #GCMRL# 220 dt 0.112000 rms 0.589 0.109% neg 0 invalid 762 tFOTS 3.5090 tGradient 0.7690 tsec 4.5860 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.588688) vs oldopt=(dt=0.08,rms=0.588849) #GCMRL# 221 dt 0.112000 rms 0.589 0.096% neg 0 invalid 762 tFOTS 3.5780 tGradient 0.7830 tsec 4.6670 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.588221) vs oldopt=(dt=0.08,rms=0.588359) #GCMRL# 222 dt 0.112000 rms 0.588 0.079% neg 0 invalid 762 tFOTS 3.6270 tGradient 0.7710 tsec 4.7040 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.587748) vs oldopt=(dt=0.08,rms=0.587874) #GCMRL# 223 dt 0.112000 rms 0.588 0.080% neg 0 invalid 762 tFOTS 3.6340 tGradient 0.7810 tsec 4.7240 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.587354) vs oldopt=(dt=0.08,rms=0.587464) #GCMRL# 224 dt 0.112000 rms 0.587 0.067% neg 0 invalid 762 tFOTS 3.5780 tGradient 0.7720 tsec 4.6630 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.586986) vs oldopt=(dt=0.08,rms=0.587089) #GCMRL# 225 dt 0.112000 rms 0.587 0.063% neg 0 invalid 762 tFOTS 3.5770 tGradient 0.8040 tsec 4.6960 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.586641) vs oldopt=(dt=0.08,rms=0.586733) #GCMRL# 226 dt 0.112000 rms 0.587 0.059% neg 0 invalid 762 tFOTS 3.5630 tGradient 0.7810 tsec 4.6540 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.58634) vs oldopt=(dt=0.08,rms=0.586427) #GCMRL# 227 dt 0.112000 rms 0.586 0.051% neg 0 invalid 762 tFOTS 3.5880 tGradient 0.7660 tsec 4.6710 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.586059) vs oldopt=(dt=0.08,rms=0.586136) #GCMRL# 228 dt 0.112000 rms 0.586 0.000% neg 0 invalid 762 tFOTS 3.5020 tGradient 0.8290 tsec 4.6540 #GCMRL# 229 dt 0.112000 rms 0.586 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7630 tsec 1.0680 #GCMRL# 230 dt 0.112000 rms 0.585 0.084% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8490 tsec 1.1650 #GCMRL# 231 dt 0.112000 rms 0.585 0.105% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7810 tsec 1.0970 #GCMRL# 232 dt 0.112000 rms 0.584 0.127% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8580 tsec 1.1720 #GCMRL# 233 dt 0.112000 rms 0.583 0.140% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8220 tsec 1.1410 #GCMRL# 234 dt 0.112000 rms 0.582 0.137% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7540 tsec 1.0570 #GCMRL# 235 dt 0.112000 rms 0.582 0.125% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7560 tsec 1.0770 #GCMRL# 236 dt 0.112000 rms 0.581 0.111% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7600 tsec 1.0610 #GCMRL# 237 dt 0.112000 rms 0.580 0.100% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7710 tsec 1.0690 #GCMRL# 238 dt 0.112000 rms 0.580 0.080% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7880 tsec 1.0870 #GCMRL# 239 dt 0.112000 rms 0.580 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7860 tsec 1.0880 #GCMRL# 240 dt 0.112000 rms 0.579 0.050% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7530 tsec 1.0490 #GCMRL# 241 dt 0.112000 rms 0.579 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7660 tsec 1.0610 #GCMRL# 242 dt 0.112000 rms 0.579 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7660 tsec 1.0680 #GCMRL# 243 dt 0.112000 rms 0.579 0.019% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7600 tsec 1.0630 #GCMRL# 244 dt 0.112000 rms 0.579 0.010% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7590 tsec 1.0720 #FOTS# QuadFit found better minimum quadopt=(dt=0.024,rms=0.578621) vs oldopt=(dt=0.02,rms=0.578621) #GCMRL# 245 dt 0.024000 rms 0.579 0.000% neg 0 invalid 762 tFOTS 3.4760 tGradient 0.7800 tsec 4.5740 #GCMRL# 246 dt 0.024000 rms 0.579 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7650 tsec 1.0690 #GCMRL# 247 dt 0.024000 rms 0.579 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7810 tsec 1.0910 #GCAMreg# pass 0 level1 0 level2 1 tsec 124.211 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.579319 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.576887) vs oldopt=(dt=0.08,rms=0.577378) #GCMRL# 249 dt 0.112000 rms 0.577 0.420% neg 0 invalid 762 tFOTS 3.4520 tGradient 0.7720 tsec 4.5230 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.575513) vs oldopt=(dt=0.08,rms=0.575897) #GCMRL# 250 dt 0.112000 rms 0.576 0.238% neg 0 invalid 762 tFOTS 3.4440 tGradient 0.7770 tsec 4.5450 #FOTS# QuadFit found better minimum quadopt=(dt=0.13125,rms=0.574312) vs oldopt=(dt=0.08,rms=0.57478) #GCMRL# 251 dt 0.131250 rms 0.574 0.209% neg 0 invalid 762 tFOTS 3.5070 tGradient 0.7740 tsec 4.5910 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.573521) vs oldopt=(dt=0.08,rms=0.573739) #GCMRL# 252 dt 0.112000 rms 0.574 0.138% neg 0 invalid 762 tFOTS 3.5410 tGradient 0.7690 tsec 4.6260 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.572943) vs oldopt=(dt=0.08,rms=0.573107) #GCMRL# 253 dt 0.112000 rms 0.573 0.101% neg 0 invalid 762 tFOTS 3.5370 tGradient 0.7890 tsec 4.6550 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.572471) vs oldopt=(dt=0.08,rms=0.572602) #GCMRL# 254 dt 0.112000 rms 0.572 0.082% neg 0 invalid 762 tFOTS 3.5020 tGradient 0.7820 tsec 4.5990 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.572122) vs oldopt=(dt=0.08,rms=0.572218) #GCMRL# 255 dt 0.112000 rms 0.572 0.061% neg 0 invalid 762 tFOTS 3.4980 tGradient 0.7700 tsec 4.5790 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.571839) vs oldopt=(dt=0.08,rms=0.571919) #GCMRL# 256 dt 0.112000 rms 0.572 0.000% neg 0 invalid 762 tFOTS 3.5410 tGradient 0.7640 tsec 4.6280 #GCMRL# 257 dt 0.112000 rms 0.572 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8020 tsec 1.1050 #GCMRL# 258 dt 0.112000 rms 0.571 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7560 tsec 1.0600 #GCMRL# 259 dt 0.112000 rms 0.571 0.073% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8160 tsec 1.1240 #GCMRL# 260 dt 0.112000 rms 0.570 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7940 tsec 1.1270 #GCMRL# 261 dt 0.112000 rms 0.570 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7760 tsec 1.0990 #GCMRL# 262 dt 0.112000 rms 0.570 -0.009% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.7820 tsec 1.3350 #FOTS# QuadFit found better minimum quadopt=(dt=0,rms=0.570331) vs oldopt=(dt=0,rms=0.570331) GCAMregister done in 11.9531 min ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** noneg post Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.56809 #GCMRL# 264 dt 0.000000 rms 0.567 0.123% neg 0 invalid 762 tFOTS 4.6840 tGradient 1.5680 tsec 6.5680 #GCAMreg# pass 0 level1 5 level2 1 tsec 15.108 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.56809 #GCMRL# 266 dt 5.780000 rms 0.567 0.124% neg 0 invalid 762 tFOTS 4.7420 tGradient 1.6670 tsec 6.7240 #FOTS# QuadFit found better minimum quadopt=(dt=0.867,rms=0.56739) vs oldopt=(dt=1.445,rms=0.56739) setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.568122 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.56665) vs oldopt=(dt=25.92,rms=0.566704) #GCMRL# 268 dt 36.288000 rms 0.567 0.259% neg 0 invalid 762 tFOTS 4.8010 tGradient 1.3110 tsec 6.4340 #FOTS# QuadFit found better minimum quadopt=(dt=69.8182,rms=0.565576) vs oldopt=(dt=103.68,rms=0.565791) #GCMRL# 269 dt 69.818182 rms 0.566 0.000% neg 0 invalid 762 tFOTS 4.7230 tGradient 1.3740 tsec 6.4300 #GCAMreg# pass 0 level1 4 level2 1 tsec 16.539 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.566301 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.564703) vs oldopt=(dt=25.92,rms=0.564878) #GCMRL# 271 dt 36.288000 rms 0.565 0.282% neg 0 invalid 762 tFOTS 4.5240 tGradient 1.3440 tsec 6.1780 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.563453) vs oldopt=(dt=103.68,rms=0.563527) #GCMRL# 272 dt 145.152000 rms 0.563 0.000% neg 0 invalid 762 tFOTS 4.5780 tGradient 1.2970 tsec 6.2030 setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.564305 #FOTS# QuadFit found better minimum quadopt=(dt=20.2132,rms=0.559533) vs oldopt=(dt=32,rms=0.560948) #GCMRL# 274 dt 20.213166 rms 0.560 0.846% neg 0 invalid 762 tFOTS 4.7340 tGradient 1.2170 tsec 6.2930 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.555955) vs oldopt=(dt=32,rms=0.556206) #GCMRL# 275 dt 25.600000 rms 0.556 0.640% neg 0 invalid 762 tFOTS 4.7860 tGradient 1.2840 tsec 6.4020 #GCMRL# 276 dt 8.000000 rms 0.555 0.000% neg 0 invalid 762 tFOTS 4.8030 tGradient 1.2550 tsec 6.3790 #GCMRL# 277 dt 8.000000 rms 0.554 0.109% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2250 tsec 1.5360 #GCMRL# 278 dt 8.000000 rms 0.553 0.173% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2230 tsec 1.5430 #GCMRL# 279 dt 8.000000 rms 0.552 0.225% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2490 tsec 1.5560 #GCMRL# 280 dt 8.000000 rms 0.551 0.253% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2140 tsec 1.5410 iter 0, gcam->neg = 3 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 281 dt 8.000000 rms 0.550 0.218% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2160 tsec 2.5420 iter 0, gcam->neg = 11 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 282 dt 8.000000 rms 0.549 0.170% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2550 tsec 4.6070 iter 0, gcam->neg = 8 after 9 iterations, nbhd size=1, neg = 0 #GCMRL# 283 dt 8.000000 rms 0.548 0.131% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2570 tsec 4.3860 iter 0, gcam->neg = 6 after 9 iterations, nbhd size=1, neg = 0 #GCMRL# 284 dt 8.000000 rms 0.547 0.079% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2040 tsec 4.3760 iter 0, gcam->neg = 22 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 285 dt 8.000000 rms 0.547 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2470 tsec 5.9700 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.546005) vs oldopt=(dt=32,rms=0.54622) iter 0, gcam->neg = 25 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 286 dt 44.800000 rms 0.546 0.240% neg 0 invalid 762 tFOTS 4.8050 tGradient 1.1810 tsec 8.4910 #GCAMreg# pass 0 level1 3 level2 1 tsec 63.593 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.546584 #FOTS# QuadFit found better minimum quadopt=(dt=29.5385,rms=0.544) vs oldopt=(dt=32,rms=0.54404) #GCMRL# 288 dt 29.538462 rms 0.544 0.473% neg 0 invalid 762 tFOTS 4.6760 tGradient 1.2500 tsec 6.2500 #FOTS# QuadFit found better minimum quadopt=(dt=25.4949,rms=0.541496) vs oldopt=(dt=32,rms=0.541721) iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 289 dt 25.494867 rms 0.541 0.460% neg 0 invalid 762 tFOTS 4.7400 tGradient 1.2000 tsec 6.7670 #FOTS# QuadFit found better minimum quadopt=(dt=9.6,rms=0.540812) vs oldopt=(dt=8,rms=0.540824) #GCMRL# 290 dt 9.600000 rms 0.541 0.000% neg 0 invalid 762 tFOTS 4.9910 tGradient 1.2950 tsec 6.6410 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 291 dt 9.600000 rms 0.540 0.082% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2720 tsec 2.3370 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 292 dt 9.600000 rms 0.540 0.137% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2420 tsec 2.3640 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 293 dt 9.600000 rms 0.539 0.143% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1920 tsec 2.2680 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 294 dt 9.600000 rms 0.538 0.157% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2150 tsec 2.3040 iter 0, gcam->neg = 4 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 295 dt 9.600000 rms 0.537 0.137% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2120 tsec 2.8460 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 296 dt 9.600000 rms 0.537 0.113% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2340 tsec 2.3310 iter 0, gcam->neg = 4 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 297 dt 9.600000 rms 0.536 0.104% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2220 tsec 3.3610 #FOTS# QuadFit found better minimum quadopt=(dt=102.4,rms=0.53537) vs oldopt=(dt=128,rms=0.53546) iter 0, gcam->neg = 1 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 298 dt 102.400000 rms 0.535 0.140% neg 0 invalid 762 tFOTS 4.5970 tGradient 1.2830 tsec 7.2630 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.534893) vs oldopt=(dt=8,rms=0.534977) #GCMRL# 299 dt 11.200000 rms 0.535 0.000% neg 0 invalid 762 tFOTS 4.5220 tGradient 1.2290 tsec 6.0700 #GCMRL# 300 dt 11.200000 rms 0.535 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.3970 tsec 1.7200 #GCMRL# 301 dt 11.200000 rms 0.534 0.070% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2140 tsec 1.5280 iter 0, gcam->neg = 3 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 302 dt 11.200000 rms 0.534 0.067% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2550 tsec 2.1170 iter 0, gcam->neg = 3 after 5 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.538759 #FOTS# QuadFit found better minimum quadopt=(dt=6.28571,rms=0.537271) vs oldopt=(dt=2.88,rms=0.537459) iter 0, gcam->neg = 7 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 304 dt 6.285714 rms 0.537 0.278% neg 0 invalid 762 tFOTS 4.7860 tGradient 1.2110 tsec 6.8320 #FOTS# QuadFit found better minimum quadopt=(dt=8.05369,rms=0.536705) vs oldopt=(dt=11.52,rms=0.536817) iter 0, gcam->neg = 5 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 305 dt 8.053691 rms 0.537 0.000% neg 0 invalid 762 tFOTS 4.8440 tGradient 1.1920 tsec 7.9560 iter 0, gcam->neg = 18 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 306 dt 8.053691 rms 0.536 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2290 tsec 5.2520 iter 0, gcam->neg = 43 after 19 iterations, nbhd size=1, neg = 0 #GCMRL# 307 dt 8.053691 rms 0.536 0.014% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2410 tsec 7.0250 iter 0, gcam->neg = 57 after 17 iterations, nbhd size=1, neg = 0 #GCAMreg# pass 0 level1 2 level2 1 tsec 35.458 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.537011 #FOTS# QuadFit found better minimum quadopt=(dt=9.03401,rms=0.534679) vs oldopt=(dt=11.52,rms=0.534792) iter 0, gcam->neg = 9 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 309 dt 9.034014 rms 0.535 0.438% neg 0 invalid 762 tFOTS 4.8920 tGradient 1.2580 tsec 7.4670 #FOTS# QuadFit found better minimum quadopt=(dt=13.364,rms=0.532047) vs oldopt=(dt=11.52,rms=0.532096) iter 0, gcam->neg = 45 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 310 dt 13.363985 rms 0.532 0.481% neg 0 invalid 762 tFOTS 4.7920 tGradient 1.1700 tsec 7.8510 #FOTS# QuadFit found better minimum quadopt=(dt=5.17073,rms=0.531149) vs oldopt=(dt=2.88,rms=0.531332) iter 0, gcam->neg = 22 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 311 dt 5.170732 rms 0.531 0.000% neg 0 invalid 762 tFOTS 4.7300 tGradient 1.1370 tsec 9.5100 iter 0, gcam->neg = 8 after 11 iterations, nbhd size=0, neg = 0 #GCMRL# 312 dt 5.170732 rms 0.530 0.147% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2210 tsec 4.8150 iter 0, gcam->neg = 14 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 313 dt 5.170732 rms 0.530 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1720 tsec 2.7720 iter 0, gcam->neg = 15 after 10 iterations, nbhd size=0, neg = 0 #GCMRL# 314 dt 5.170732 rms 0.530 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1890 tsec 4.5610 iter 0, gcam->neg = 16 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 315 dt 5.170732 rms 0.529 0.170% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1630 tsec 3.2860 iter 0, gcam->neg = 39 after 10 iterations, nbhd size=0, neg = 0 #GCMRL# 316 dt 5.170732 rms 0.527 0.351% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1610 tsec 4.5000 iter 0, gcam->neg = 85 after 16 iterations, nbhd size=1, neg = 0 #GCMRL# 317 dt 5.170732 rms 0.525 0.354% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1680 tsec 6.2460 iter 0, gcam->neg = 124 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 318 dt 5.170732 rms 0.524 0.269% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1640 tsec 5.7850 iter 0, gcam->neg = 197 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 319 dt 5.170732 rms 0.523 0.117% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1640 tsec 3.5020 iter 0, gcam->neg = 180 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 320 dt 5.170732 rms 0.523 0.124% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1400 tsec 3.4930 iter 0, gcam->neg = 146 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 321 dt 5.170732 rms 0.522 0.157% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1660 tsec 3.7730 iter 0, gcam->neg = 153 after 8 iterations, nbhd size=0, neg = 0 #GCMRL# 322 dt 5.170732 rms 0.521 0.147% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2670 tsec 4.0670 iter 0, gcam->neg = 159 after 11 iterations, nbhd size=0, neg = 0 #GCMRL# 323 dt 5.170732 rms 0.521 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.2460 tsec 4.9750 iter 0, gcam->neg = 170 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 324 dt 5.170732 rms 0.521 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1990 tsec 3.9100 #FOTS# QuadFit found better minimum quadopt=(dt=9.84615,rms=0.5198) vs oldopt=(dt=11.52,rms=0.519828) iter 0, gcam->neg = 52 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 325 dt 9.846154 rms 0.520 0.170% neg 0 invalid 762 tFOTS 4.8570 tGradient 1.1950 tsec 8.2220 #FOTS# QuadFit found better minimum quadopt=(dt=2.66667,rms=0.519653) vs oldopt=(dt=2.88,rms=0.519653) iter 0, gcam->neg = 11 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 326 dt 2.666667 rms 0.520 0.000% neg 0 invalid 762 tFOTS 4.7790 tGradient 1.1650 tsec 8.0940 iter 0, gcam->neg = 10 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 327 dt 2.666667 rms 0.520 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.1870 tsec 3.8550 iter 0, gcam->neg = 18 after 6 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.526787 #GCMRL# 329 dt 0.000000 rms 0.526 0.136% neg 0 invalid 762 tFOTS 4.6590 tGradient 1.1490 tsec 6.1450 #GCAMreg# pass 0 level1 1 level2 1 tsec 14.232 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.526787 #GCMRL# 331 dt 0.000000 rms 0.526 0.136% neg 0 invalid 762 tFOTS 4.6040 tGradient 1.2310 tsec 6.1530 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.515894 #FOTS# QuadFit found better minimum quadopt=(dt=1.64268,rms=0.479259) vs oldopt=(dt=1.28,rms=0.481216) iter 0, gcam->neg = 2495 after 16 iterations, nbhd size=1, neg = 0 #GCMRL# 333 dt 1.642680 rms 0.483 6.471% neg 0 invalid 762 tFOTS 4.5740 tGradient 0.7810 tsec 10.3360 #GCMRL# 334 dt 0.000013 rms 0.482 0.000% neg 0 invalid 762 tFOTS 5.9970 tGradient 0.7500 tsec 7.0900 #GCAMreg# pass 0 level1 0 level2 1 tsec 20.58 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.483322 #GCMRL# 336 dt 0.020000 rms 0.482 0.181% neg 0 invalid 762 tFOTS 4.7170 tGradient 0.7940 tsec 5.8100 #FOTS# QuadFit found better minimum quadopt=(dt=0.003,rms=0.482459) vs oldopt=(dt=0.005,rms=0.48246) label assignment complete, 0 changed (0.00%) GCAMregister done in 6.48585 min Starting GCAMcomputeMaxPriorLabels() Morphing with label term set to 0 ******************************* Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.469519 #GCAMreg# pass 0 level1 5 level2 1 tsec 7.563 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.469519 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.469681 #FOTS# QuadFit found better minimum quadopt=(dt=2.268,rms=0.469672) vs oldopt=(dt=1.62,rms=0.469673) #GCMRL# 340 dt 2.268000 rms 0.470 0.002% neg 0 invalid 762 tFOTS 4.3230 tGradient 0.9030 tsec 5.5310 #FOTS# QuadFit found better minimum quadopt=(dt=1.296,rms=0.469671) vs oldopt=(dt=1.62,rms=0.469671) #GCMRL# 341 dt 1.296000 rms 0.470 0.000% neg 0 invalid 762 tFOTS 4.3470 tGradient 0.9210 tsec 5.5890 #GCAMreg# pass 0 level1 4 level2 1 tsec 14.276 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.469671 #FOTS# QuadFit found better minimum quadopt=(dt=20.736,rms=0.469562) vs oldopt=(dt=25.92,rms=0.469566) #GCMRL# 343 dt 20.736000 rms 0.470 0.023% neg 0 invalid 762 tFOTS 4.2140 tGradient 0.9900 tsec 5.5160 #FOTS# QuadFit found better minimum quadopt=(dt=22,rms=0.469529) vs oldopt=(dt=25.92,rms=0.46953) #GCMRL# 344 dt 22.000000 rms 0.470 0.000% neg 0 invalid 762 tFOTS 4.4260 tGradient 1.0450 tsec 5.7770 #GCMRL# 345 dt 22.000000 rms 0.470 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.0530 tsec 1.3510 iter 0, gcam->neg = 3 after 0 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.470123 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.46917) vs oldopt=(dt=8,rms=0.469326) iter 0, gcam->neg = 21 after 9 iterations, nbhd size=1, neg = 0 #GCMRL# 347 dt 11.200000 rms 0.469 0.169% neg 0 invalid 762 tFOTS 4.5140 tGradient 0.9360 tsec 8.6010 #FOTS# QuadFit found better minimum quadopt=(dt=9.6,rms=0.469158) vs oldopt=(dt=8,rms=0.46916) iter 0, gcam->neg = 24 after 11 iterations, nbhd size=1, neg = 0 #GCAMreg# pass 0 level1 3 level2 1 tsec 19.849 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.46933 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.467573) vs oldopt=(dt=32,rms=0.467625) iter 0, gcam->neg = 42 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 349 dt 38.400000 rms 0.468 0.289% neg 0 invalid 762 tFOTS 4.6600 tGradient 0.8600 tsec 10.0860 #FOTS# QuadFit found better minimum quadopt=(dt=9.6,rms=0.467863) vs oldopt=(dt=8,rms=0.467866) iter 0, gcam->neg = 6 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 350 dt 9.600000 rms 0.468 0.000% neg 0 invalid 762 tFOTS 4.5010 tGradient 0.8790 tsec 9.0540 iter 0, gcam->neg = 6 after 10 iterations, nbhd size=1, neg = 0 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.470099 #FOTS# QuadFit found better minimum quadopt=(dt=11.9119,rms=0.466259) vs oldopt=(dt=11.52,rms=0.466261) iter 0, gcam->neg = 160 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 352 dt 11.911894 rms 0.468 0.450% neg 0 invalid 762 tFOTS 4.4870 tGradient 0.7790 tsec 9.7930 #FOTS# QuadFit found better minimum quadopt=(dt=4.94118,rms=0.467608) vs oldopt=(dt=2.88,rms=0.467671) iter 0, gcam->neg = 42 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 353 dt 4.941176 rms 0.468 0.000% neg 0 invalid 762 tFOTS 4.5390 tGradient 0.8270 tsec 8.7430 iter 0, gcam->neg = 26 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 354 dt 4.941176 rms 0.468 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8000 tsec 2.9930 iter 0, gcam->neg = 66 after 19 iterations, nbhd size=1, neg = 0 #GCAMreg# pass 0 level1 2 level2 1 tsec 29.92 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.467561 #FOTS# QuadFit found better minimum quadopt=(dt=9.216,rms=0.466372) vs oldopt=(dt=11.52,rms=0.466447) iter 0, gcam->neg = 24 after 9 iterations, nbhd size=1, neg = 0 #GCMRL# 356 dt 9.216000 rms 0.466 0.240% neg 0 invalid 762 tFOTS 4.6200 tGradient 0.8310 tsec 8.6270 #FOTS# QuadFit found better minimum quadopt=(dt=21.0909,rms=0.463596) vs oldopt=(dt=11.52,rms=0.46419) iter 0, gcam->neg = 168 after 16 iterations, nbhd size=1, neg = 0 #GCMRL# 357 dt 21.090909 rms 0.464 0.468% neg 0 invalid 762 tFOTS 4.6340 tGradient 0.8120 tsec 10.5440 #FOTS# QuadFit found better minimum quadopt=(dt=4.21053,rms=0.463954) vs oldopt=(dt=2.88,rms=0.463981) iter 0, gcam->neg = 14 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 358 dt 4.210526 rms 0.464 0.000% neg 0 invalid 762 tFOTS 4.6890 tGradient 0.8220 tsec 7.6920 iter 0, gcam->neg = 14 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 359 dt 4.210526 rms 0.464 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8020 tsec 3.5560 iter 0, gcam->neg = 35 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 360 dt 4.210526 rms 0.464 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8090 tsec 3.2100 iter 0, gcam->neg = 50 after 11 iterations, nbhd size=0, neg = 0 #GCMRL# 361 dt 4.210526 rms 0.463 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8780 tsec 4.5910 iter 0, gcam->neg = 79 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 362 dt 4.210526 rms 0.463 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.8040 tsec 5.5880 #FOTS# QuadFit found better minimum quadopt=(dt=9.89474,rms=0.462923) vs oldopt=(dt=11.52,rms=0.462934) iter 0, gcam->neg = 33 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 363 dt 9.894737 rms 0.463 0.066% neg 0 invalid 762 tFOTS 4.4900 tGradient 0.7930 tsec 9.7000 #FOTS# QuadFit found better minimum quadopt=(dt=9.216,rms=0.46277) vs oldopt=(dt=11.52,rms=0.462787) iter 0, gcam->neg = 31 after 6 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.468476 #FOTS# QuadFit found better minimum quadopt=(dt=6e-05,rms=0.468476) vs oldopt=(dt=5e-05,rms=0.468476) #GCMRL# 365 dt 0.000060 rms 0.468 0.000% neg 0 invalid 762 tFOTS 5.6320 tGradient 0.7780 tsec 6.7080 #GCAMreg# pass 0 level1 1 level2 1 tsec 14.072 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.468476 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.458963 #FOTS# QuadFit found better minimum quadopt=(dt=0.857998,rms=0.447474) vs oldopt=(dt=1.28,rms=0.450731) iter 0, gcam->neg = 1023 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 368 dt 0.857998 rms 0.449 2.213% neg 0 invalid 762 tFOTS 4.5610 tGradient 0.3560 tsec 9.3440 #FOTS# QuadFit found better minimum quadopt=(dt=0.064,rms=0.4487) vs oldopt=(dt=0.08,rms=0.448706) #GCMRL# 369 dt 0.064000 rms 0.449 0.000% neg 0 invalid 762 tFOTS 4.5990 tGradient 0.4550 tsec 5.3820 #GCMRL# 370 dt 0.064000 rms 0.449 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3850 tsec 0.6870 #GCAMreg# pass 0 level1 0 level2 1 tsec 18.181 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.448628 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.44574) vs oldopt=(dt=0.32,rms=0.445998) iter 0, gcam->neg = 21 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 372 dt 0.448000 rms 0.446 0.635% neg 0 invalid 762 tFOTS 4.5870 tGradient 0.4370 tsec 6.3740 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.44345) vs oldopt=(dt=0.32,rms=0.443753) iter 0, gcam->neg = 70 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 373 dt 0.448000 rms 0.443 0.522% neg 0 invalid 762 tFOTS 4.5980 tGradient 0.3940 tsec 6.5900 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.44273) vs oldopt=(dt=0.32,rms=0.442759) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 374 dt 0.256000 rms 0.443 0.000% neg 0 invalid 762 tFOTS 4.6360 tGradient 0.4640 tsec 5.9770 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 375 dt 0.256000 rms 0.441 0.277% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3650 tsec 1.1730 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 376 dt 0.256000 rms 0.440 0.252% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.4030 tsec 1.5140 iter 0, gcam->neg = 10 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 377 dt 0.256000 rms 0.440 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3810 tsec 1.7520 iter 0, gcam->neg = 27 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 378 dt 0.256000 rms 0.439 0.122% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3700 tsec 1.9170 iter 0, gcam->neg = 41 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 379 dt 0.256000 rms 0.439 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3610 tsec 4.0770 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.438984) vs oldopt=(dt=0.08,rms=0.43899) #GCMRL# 380 dt 0.112000 rms 0.439 0.000% neg 0 invalid 762 tFOTS 4.4910 tGradient 0.3680 tsec 5.1780 #GCMRL# 381 dt 0.112000 rms 0.439 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3630 tsec 0.6570 #GCMRL# 382 dt 0.112000 rms 0.439 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3750 tsec 0.6720 #GCMRL# 383 dt 0.112000 rms 0.439 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 0.3750 tsec 0.6670 GCAMregister done in 4.31935 min writing output transformation to transforms/talairach.m3z... GCAMwrite Calls to gcamLogLikelihoodEnergy 3997 tmin = 3.8148 Calls to gcamLabelEnergy 3409 tmin = 0.764283 Calls to gcamJacobianEnergy 3997 tmin = 1.57708 Calls to gcamSmoothnessEnergy 3997 tmin = 2.91485 Calls to gcamLogLikelihoodTerm 385 tmin = 0.4168 Calls to gcamLabelTerm 338 tmin = 2.71258 Calls to gcamJacobianTerm 385 tmin = 0.98195 Calls to gcamSmoothnessTerm 385 tmin = 0.3258 Calls to gcamComputeGradient 385 tmin = 8.01338 Calls to gcamComputeMetricProperties 5834 tmin = 3.56267 mri_ca_register took 0 hours, 31 minutes and 45 seconds. #VMPC# mri_ca_register VmPeak 2860504 FSRUNTIME@ mri_ca_register 0.5291 hours 8 threads #-------------------------------------- #@# SubCort Seg Tue Feb 4 17:57:27 UTC 2025 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /opt/freesurfer/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz sysname Linux hostname ce0d19ffe332 machine x86_64 setenv SUBJECTS_DIR /out/sourcedata/freesurfer cd /out/sourcedata/freesurfer/sub-M137/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /opt/freesurfer/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 == Number of threads available to for OpenMP = 8 == reading 1 input volumes reading classifier array from /opt/freesurfer/average/RB_all_2020-01-02.gca reading input volume from norm.mgz average std[0] = 7.2 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 7.19 Atlas used for the 3D morph was /opt/freesurfer/average/RB_all_2020-01-02.gca average std = 7.2 using min determinant for regularization = 5.2 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15521 (20) mri peak = 0.06886 (18) Left_Lateral_Ventricle (4): linear fit = 0.87 x + 0.0 (1011 voxels, overlap=0.775) Left_Lateral_Ventricle (4): linear fit = 0.87 x + 0.0 (1011 voxels, peak = 17), gca=17.3 gca peak = 0.20380 (13) mri peak = 0.09041 (21) Right_Lateral_Ventricle (43): linear fit = 1.42 x + 0.0 (1794 voxels, overlap=0.606) Right_Lateral_Ventricle (43): linear fit = 1.42 x + 0.0 (1794 voxels, peak = 19), gca=18.5 gca peak = 0.26283 (96) mri peak = 0.11485 (92) Right_Pallidum (52): linear fit = 0.99 x + 0.0 (604 voxels, overlap=1.010) Right_Pallidum (52): linear fit = 0.99 x + 0.0 (604 voxels, peak = 95), gca=94.6 gca peak = 0.15814 (97) mri peak = 0.08809 (102) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (723 voxels, overlap=0.348) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (723 voxels, peak = 109), gca=109.1 gca peak = 0.27624 (56) mri peak = 0.11635 (64) Right_Hippocampus (53): linear fit = 1.12 x + 0.0 (1000 voxels, overlap=0.641) Right_Hippocampus (53): linear fit = 1.12 x + 0.0 (1000 voxels, peak = 63), gca=63.0 gca peak = 0.28723 (59) mri peak = 0.07951 (57) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (818 voxels, overlap=1.016) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (818 voxels, peak = 59), gca=59.0 gca peak = 0.07623 (103) mri peak = 0.09014 (107) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (43981 voxels, overlap=0.618) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (43981 voxels, peak = 107), gca=106.6 gca peak = 0.07837 (105) mri peak = 0.07808 (107) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (42149 voxels, overlap=0.620) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (42149 voxels, peak = 110), gca=109.7 gca peak = 0.10165 (58) mri peak = 0.02576 (73) Left_Cerebral_Cortex (3): linear fit = 1.26 x + 0.0 (13182 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.26 x + 0.0 (13182 voxels, peak = 73), gca=73.4 gca peak = 0.11113 (58) mri peak = 0.03288 (57) Right_Cerebral_Cortex (42): linear fit = 1.10 x + 0.0 (13065 voxels, overlap=0.525) Right_Cerebral_Cortex (42): linear fit = 1.10 x + 0.0 (13065 voxels, peak = 64), gca=63.5 gca peak = 0.27796 (67) mri peak = 0.08255 (88) Right_Caudate (50): linear fit = 1.25 x + 0.0 (1286 voxels, overlap=0.031) Right_Caudate (50): linear fit = 1.25 x + 0.0 (1286 voxels, peak = 84), gca=84.1 gca peak = 0.14473 (69) mri peak = 0.09053 (80) Left_Caudate (11): linear fit = 1.10 x + 0.0 (838 voxels, overlap=1.007) Left_Caudate (11): linear fit = 1.10 x + 0.0 (838 voxels, peak = 76), gca=75.6 gca peak = 0.14301 (56) mri peak = 0.04487 (51) Left_Cerebellum_Cortex (8): linear fit = 0.93 x + 0.0 (12408 voxels, overlap=0.895) Left_Cerebellum_Cortex (8): linear fit = 0.93 x + 0.0 (12408 voxels, peak = 52), gca=51.8 gca peak = 0.14610 (55) mri peak = 0.04309 (49) Right_Cerebellum_Cortex (47): linear fit = 0.83 x + 0.0 (13209 voxels, overlap=0.497) Right_Cerebellum_Cortex (47): linear fit = 0.83 x + 0.0 (13209 voxels, peak = 46), gca=45.9 gca peak = 0.16309 (85) mri peak = 0.09287 (87) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (6371 voxels, overlap=0.915) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (6371 voxels, peak = 87), gca=87.1 gca peak = 0.15172 (84) mri peak = 0.07319 (77) Right_Cerebellum_White_Matter (46): linear fit = 0.96 x + 0.0 (6517 voxels, overlap=0.994) Right_Cerebellum_White_Matter (46): linear fit = 0.96 x + 0.0 (6517 voxels, peak = 81), gca=81.1 gca peak = 0.30461 (58) mri peak = 0.11869 (58) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (437 voxels, overlap=1.008) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (437 voxels, peak = 59), gca=58.9 gca peak = 0.32293 (57) mri peak = 0.11059 (66) Right_Amygdala (54): linear fit = 1.16 x + 0.0 (636 voxels, overlap=0.305) Right_Amygdala (54): linear fit = 1.16 x + 0.0 (636 voxels, peak = 66), gca=66.4 gca peak = 0.11083 (90) mri peak = 0.09009 (93) Left_Thalamus (10): linear fit = 1.08 x + 0.0 (5347 voxels, overlap=0.736) Left_Thalamus (10): linear fit = 1.08 x + 0.0 (5347 voxels, peak = 97), gca=96.8 gca peak = 0.11393 (83) mri peak = 0.11468 (90) Right_Thalamus (49): linear fit = 1.12 x + 0.0 (4671 voxels, overlap=0.464) Right_Thalamus (49): linear fit = 1.12 x + 0.0 (4671 voxels, peak = 93), gca=92.5 gca peak = 0.08575 (81) mri peak = 0.04931 (88) Left_Putamen (12): linear fit = 1.12 x + 0.0 (1154 voxels, overlap=0.519) Left_Putamen (12): linear fit = 1.12 x + 0.0 (1154 voxels, peak = 90), gca=90.3 gca peak = 0.08618 (78) mri peak = 0.06156 (88) Right_Putamen (51): linear fit = 1.09 x + 0.0 (1991 voxels, overlap=0.765) Right_Putamen (51): linear fit = 1.09 x + 0.0 (1991 voxels, peak = 85), gca=84.6 gca peak = 0.08005 (78) mri peak = 0.08710 (85) Brain_Stem (16): linear fit = 1.07 x + 0.0 (13941 voxels, overlap=0.491) Brain_Stem (16): linear fit = 1.07 x + 0.0 (13941 voxels, peak = 83), gca=83.1 gca peak = 0.12854 (88) mri peak = 0.10289 (89) Right_VentralDC (60): linear fit = 1.02 x + 0.0 (2026 voxels, overlap=0.789) Right_VentralDC (60): linear fit = 1.02 x + 0.0 (2026 voxels, peak = 90), gca=90.2 gca peak = 0.15703 (87) mri peak = 0.08012 (92) Left_VentralDC (28): linear fit = 1.08 x + 0.0 (1811 voxels, overlap=0.735) Left_VentralDC (28): linear fit = 1.08 x + 0.0 (1811 voxels, peak = 94), gca=93.5 gca peak = 0.17522 (25) mri peak = 0.14442 (33) Third_Ventricle (14): linear fit = 1.29 x + 0.0 (110 voxels, overlap=0.425) Third_Ventricle (14): linear fit = 1.29 x + 0.0 (110 voxels, peak = 32), gca=32.4 gca peak = 0.17113 (14) mri peak = 0.17809 (10) Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (386 voxels, overlap=0.590) Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (386 voxels, peak = 9), gca=8.8 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.16627 (28) gca peak Fourth_Ventricle = 0.17113 (14) gca peak CSF = 0.20346 (36) gca peak Left_Accumbens_area = 0.70646 (62) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89917 (53) gca peak Left_choroid_plexus = 0.11689 (35) gca peak Right_Inf_Lat_Vent = 0.25504 (23) gca peak Right_Accumbens_area = 0.31650 (65) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13275 (38) gca peak Fifth_Ventricle = 0.60973 (33) gca peak WM_hypointensities = 0.11013 (77) gca peak non_WM_hypointensities = 0.11354 (41) gca peak Optic_Chiasm = 0.51646 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.11 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 1.20 x + 0.0 Left_Pallidum too bright - rescaling by 0.961 (from 1.125) to 104.9 (was 109.1) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.17101 (16) mri peak = 0.06886 (18) Left_Lateral_Ventricle (4): linear fit = 1.08 x + 0.0 (1011 voxels, overlap=0.847) Left_Lateral_Ventricle (4): linear fit = 1.08 x + 0.0 (1011 voxels, peak = 17), gca=17.2 gca peak = 0.15967 (18) mri peak = 0.09041 (21) Right_Lateral_Ventricle (43): linear fit = 1.09 x + 0.0 (1794 voxels, overlap=0.662) Right_Lateral_Ventricle (43): linear fit = 1.09 x + 0.0 (1794 voxels, peak = 20), gca=19.5 gca peak = 0.21318 (93) mri peak = 0.11485 (92) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (604 voxels, overlap=1.004) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (604 voxels, peak = 93), gca=92.5 gca peak = 0.14692 (102) mri peak = 0.08809 (102) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (723 voxels, overlap=1.004) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (723 voxels, peak = 103), gca=102.5 gca peak = 0.23643 (63) mri peak = 0.11635 (64) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (1000 voxels, overlap=1.005) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (1000 voxels, peak = 63), gca=63.0 gca peak = 0.29202 (59) mri peak = 0.07951 (57) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (818 voxels, overlap=1.002) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (818 voxels, peak = 59), gca=59.0 gca peak = 0.07638 (107) mri peak = 0.09014 (107) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43981 voxels, overlap=0.761) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43981 voxels, peak = 107), gca=107.0 gca peak = 0.07449 (109) mri peak = 0.07808 (107) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (42149 voxels, overlap=0.809) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (42149 voxels, peak = 108), gca=108.5 gca peak = 0.07760 (72) mri peak = 0.02576 (73) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (13182 voxels, overlap=0.147) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (13182 voxels, peak = 70), gca=70.2 gca peak = 0.10313 (64) mri peak = 0.03288 (57) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (13065 voxels, overlap=0.634) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (13065 voxels, peak = 66), gca=65.6 gca peak = 0.19429 (83) mri peak = 0.08255 (88) Right_Caudate (50): linear fit = 1.00 x + 0.0 (1286 voxels, overlap=1.003) Right_Caudate (50): linear fit = 1.00 x + 0.0 (1286 voxels, peak = 83), gca=83.0 gca peak = 0.14712 (85) mri peak = 0.09053 (80) Left_Caudate (11): linear fit = 0.93 x + 0.0 (838 voxels, overlap=0.940) Left_Caudate (11): linear fit = 0.93 x + 0.0 (838 voxels, peak = 79), gca=78.6 gca peak = 0.15209 (52) mri peak = 0.04487 (51) Left_Cerebellum_Cortex (8): linear fit = 0.98 x + 0.0 (12408 voxels, overlap=0.998) Left_Cerebellum_Cortex (8): linear fit = 0.98 x + 0.0 (12408 voxels, peak = 51), gca=50.7 gca peak = 0.18231 (46) mri peak = 0.04309 (49) Right_Cerebellum_Cortex (47): linear fit = 1.03 x + 0.0 (13209 voxels, overlap=0.999) Right_Cerebellum_Cortex (47): linear fit = 1.03 x + 0.0 (13209 voxels, peak = 48), gca=47.6 gca peak = 0.15754 (87) mri peak = 0.09287 (87) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6371 voxels, overlap=0.964) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6371 voxels, peak = 87), gca=86.6 gca peak = 0.15773 (81) mri peak = 0.07319 (77) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (6517 voxels, overlap=0.973) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (6517 voxels, peak = 81), gca=81.0 gca peak = 0.27861 (59) mri peak = 0.11869 (58) Left_Amygdala (18): linear fit = 0.99 x + 0.0 (437 voxels, overlap=0.987) Left_Amygdala (18): linear fit = 0.99 x + 0.0 (437 voxels, peak = 58), gca=58.1 gca peak = 0.28413 (66) mri peak = 0.11059 (66) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (636 voxels, overlap=1.011) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (636 voxels, peak = 67), gca=67.0 gca peak = 0.10339 (95) mri peak = 0.09009 (93) Left_Thalamus (10): linear fit = 0.99 x + 0.0 (5347 voxels, overlap=0.973) Left_Thalamus (10): linear fit = 0.99 x + 0.0 (5347 voxels, peak = 94), gca=93.6 gca peak = 0.09839 (90) mri peak = 0.11468 (90) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (4671 voxels, overlap=0.834) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (4671 voxels, peak = 90), gca=90.0 gca peak = 0.08172 (84) mri peak = 0.04931 (88) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1154 voxels, overlap=0.594) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1154 voxels, peak = 85), gca=85.3 gca peak = 0.09423 (82) mri peak = 0.06156 (88) Right_Putamen (51): linear fit = 1.01 x + 0.0 (1991 voxels, overlap=0.997) Right_Putamen (51): linear fit = 1.01 x + 0.0 (1991 voxels, peak = 83), gca=83.2 gca peak = 0.07206 (86) mri peak = 0.08710 (85) Brain_Stem (16): linear fit = 1.02 x + 0.0 (13941 voxels, overlap=0.731) Brain_Stem (16): linear fit = 1.02 x + 0.0 (13941 voxels, peak = 88), gca=88.2 gca peak = 0.12546 (91) mri peak = 0.10289 (89) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (2026 voxels, overlap=0.819) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (2026 voxels, peak = 91), gca=90.5 gca peak = 0.14519 (93) mri peak = 0.08012 (92) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1811 voxels, overlap=0.924) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1811 voxels, peak = 93), gca=92.5 gca peak = 0.12723 (33) mri peak = 0.14442 (33) Third_Ventricle (14): linear fit = 1.01 x + 0.0 (110 voxels, overlap=0.814) Third_Ventricle (14): linear fit = 1.01 x + 0.0 (110 voxels, peak = 33), gca=33.5 gca peak = 0.16806 (19) mri peak = 0.17809 (10) Fourth_Ventricle (15): linear fit = 0.51 x + 0.0 (386 voxels, overlap=0.278) Fourth_Ventricle (15): linear fit = 0.51 x + 0.0 (386 voxels, peak = 10), gca=9.8 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.16901 (28) gca peak Fourth_Ventricle = 0.16806 (19) gca peak CSF = 0.18118 (43) gca peak Left_Accumbens_area = 0.58130 (68) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89917 (53) gca peak Left_choroid_plexus = 0.10625 (35) gca peak Right_Inf_Lat_Vent = 0.23584 (26) gca peak Right_Accumbens_area = 0.32600 (81) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13416 (38) gca peak Fifth_Ventricle = 0.59705 (39) gca peak WM_hypointensities = 0.09991 (80) gca peak non_WM_hypointensities = 0.13982 (42) gca peak Optic_Chiasm = 0.51650 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.06 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 87145 voxels changed in iteration 0 of unlikely voxel relabeling 163 voxels changed in iteration 1 of unlikely voxel relabeling 6 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 58521 gm and wm labels changed (%24 to gray, %76 to white out of all changed labels) 487 hippocampal voxels changed. 0 amygdala voxels changed. Reclassifying using Gibbs Priors pass 1: 86080 changed. image ll: -2.181, PF=0.500 pass 2: 23309 changed. image ll: -2.180, PF=0.500 pass 3: 7003 changed. pass 4: 2624 changed. 58193 voxels changed in iteration 0 of unlikely voxel relabeling 436 voxels changed in iteration 1 of unlikely voxel relabeling 8 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 10668 voxels changed in iteration 0 of unlikely voxel relabeling 268 voxels changed in iteration 1 of unlikely voxel relabeling 39 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 11203 voxels changed in iteration 0 of unlikely voxel relabeling 77 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 9573 voxels changed in iteration 0 of unlikely voxel relabeling 73 voxels changed in iteration 1 of unlikely voxel relabeling 9 voxels changed in iteration 2 of unlikely voxel relabeling 3 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling !!!!!!!!! ventricle segment 1 with volume 6145 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 0 with volume 634 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 2 with volume 7885 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 0 with volume 423 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 1 with volume 135 above threshold 100 - not erasing !!!!!!!!!! writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 1930.697911 mri_ca_label stimesec 3.719934 mri_ca_label ru_maxrss 2192392 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 1243039 mri_ca_label ru_majflt 18 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 1904 mri_ca_label ru_oublock 784 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 1153 mri_ca_label ru_nivcsw 9606 auto-labeling took 31 minutes and 7 seconds. #-------------------------------------- #@# CC Seg Tue Feb 4 18:28:35 UTC 2025 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /out/sourcedata/freesurfer/sub-M137/mri/transforms/cc_up.lta sub-M137 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /out/sourcedata/freesurfer/sub-M137/mri/transforms/cc_up.lta reading aseg from /out/sourcedata/freesurfer/sub-M137/mri/aseg.auto_noCCseg.mgz reading norm from /out/sourcedata/freesurfer/sub-M137/mri/norm.mgz 25060 voxels in left wm, 77587 in right wm, xrange [120, 132] searching rotation angles z=[-9 5], y=[-10 4] searching scale 1 Z rot -8.6 searching scale 1 Z rot -8.3 searching scale 1 Z rot -8.1 searching scale 1 Z rot -7.8 searching scale 1 Z rot -7.6 searching scale 1 Z rot -7.3 searching scale 1 Z rot -7.1 searching scale 1 Z rot -6.8 searching scale 1 Z rot -6.6 searching scale 1 Z rot -6.3 searching scale 1 Z rot -6.1 searching scale 1 Z rot -5.8 searching scale 1 Z rot -5.6 searching scale 1 Z rot -5.3 searching scale 1 Z rot -5.1 searching scale 1 Z rot -4.8 searching scale 1 Z rot -4.6 searching scale 1 Z rot -4.3 searching scale 1 Z rot -4.1 searching scale 1 Z rot -3.8 searching scale 1 Z rot -3.6 searching scale 1 Z rot -3.3 searching scale 1 Z rot -3.1 searching scale 1 Z rot -2.8 searching scale 1 Z rot -2.6 searching scale 1 Z rot -2.3 searching scale 1 Z rot -2.1 searching scale 1 Z rot -1.8 searching scale 1 Z rot -1.6 searching scale 1 Z rot -1.3 searching scale 1 Z rot -1.1 searching scale 1 Z rot -0.8 searching scale 1 Z rot -0.6 searching scale 1 Z rot -0.3 searching scale 1 Z rot -0.1 searching scale 1 Z rot 0.2 searching scale 1 Z rot 0.4 searching scale 1 Z rot 0.7 searching scale 1 Z rot 0.9 searching scale 1 Z rot 1.2 searching scale 1 Z rot 1.4 searching scale 1 Z rot 1.7 searching scale 1 Z rot 1.9 searching scale 1 Z rot 2.2 searching scale 1 Z rot 2.4 searching scale 1 Z rot 2.7 searching scale 1 Z rot 2.9 searching scale 1 Z rot 3.2 searching scale 1 Z rot 3.4 searching scale 1 Z rot 3.7 searching scale 1 Z rot 3.9 searching scale 1 Z rot 4.2 searching scale 1 Z rot 4.4 searching scale 1 Z rot 4.7 searching scale 1 Z rot 4.9 searching scale 1 Z rot 5.2 searching scale 1 Z rot 5.4 global minimum found at slice 127.0, rotations (-2.54, -1.33) final transformation (x=127.0, yr=-2.544, zr=-1.326): 0.99875 0.02315 -0.04437 2.15091; -0.02313 0.99973 0.00103 8.88133; 0.04438 0.00000 0.99901 36.44809; 0.00000 0.00000 0.00000 1.00000; updating x range to be [124, 131] in xformed coordinates best xformed slice 128 min_x_fornix = 155 min_x_fornix = 164 WARNING: min_x_fornix not set min_x_fornix = 176 min_x_fornix = 137 cc center is found at 128 122 86 eigenvectors: 0.00158 0.00398 0.99999; -0.13262 -0.99116 0.00415; 0.99117 -0.13263 -0.00104; writing aseg with callosum to /out/sourcedata/freesurfer/sub-M137/mri/aseg.auto.mgz... corpus callosum segmentation took 0.5 minutes #VMPC# mri_cc VmPeak 488580 mri_cc done #-------------------------------------- #@# Merge ASeg Tue Feb 4 18:29:02 UTC 2025 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Tue Feb 4 18:29:02 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_normalize -seed 1234 -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... NOT doing gentle normalization with control points/label processing with aseg removing outliers in the aseg WM... 940 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 66 (66), valley at 0 (-1) csf peak at 33, setting threshold to 55 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 64 (64), valley at 0 (-1) csf peak at 32, setting threshold to 53 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 49 seconds. #-------------------------------------------- #@# Mask BFS Tue Feb 4 18:30:53 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1580798 voxels in mask (pct= 9.42) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Tue Feb 4 18:30:53 UTC 2025 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (103.0): 103.8 +- 4.9 [79.0 --> 125.0] CCS GM (70.0) : 68.1 +- 11.2 [30.0 --> 95.0] white_mean 103.783 white_sigma 4.94188 gray_mean 68.0929 gray_sigma 11.1593 setting bottom of white matter range wm_low to 79.3 setting top of gray matter range gray_hi to 90.4 wm_low 79.2522 wm_hi 125 gray_low 30 gray_hi 90.4115 Redoing initial intensity segmentation... Recomputing local statistics to label ambiguous voxels... wm_low 79.2522 wm_hi 125 gray_low 30 gray_hi 90.4115 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 90.4115, wm_low = 79.2522 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=90.4115, wmlow=79.2522 147128 voxels processed (0.88%) 71556 voxels white (0.43%) 75572 voxels non-white (0.45%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=74.2522, gray_hi=90.4115, wsize=13 226964 voxels tested (1.35%) 57637 voxels changed (0.34%) 48966 multi-scale searches (0.29%) Recovering bright white MRIrecoverBrightWhite() wm_low 79.2522 wm_hi 125 slack 4.94188 pct_thresh 0.33 intensity_thresh 129.942 nvox_thresh 8.58 93 voxels tested (0.00%) 24 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=74.2522, hithr=90.4115 smoothing input volume with sigma = 0.250 107868 voxels tested (0.64%) 21422 voxels changed (0.13%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 3583 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 1752 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 6666 filled MRIfindBrightNonWM(): 1180 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.9 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.37 minutes reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 3021 additional wm voxels added 0 additional wm voxels added SEG EDIT: 40742 voxels turned on, 32368 voxels turned off. propagating editing to output volume from wm.seg.mgz writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 21 found - 21 modified | TOTAL: 21 pass 2 (xy+): 0 found - 21 modified | TOTAL: 21 pass 1 (xy-): 22 found - 22 modified | TOTAL: 43 pass 2 (xy-): 0 found - 22 modified | TOTAL: 43 pass 1 (yz+): 27 found - 27 modified | TOTAL: 70 pass 2 (yz+): 0 found - 27 modified | TOTAL: 70 pass 1 (yz-): 15 found - 15 modified | TOTAL: 85 pass 2 (yz-): 0 found - 15 modified | TOTAL: 85 pass 1 (xz+): 14 found - 14 modified | TOTAL: 99 pass 2 (xz+): 0 found - 14 modified | TOTAL: 99 pass 1 (xz-): 17 found - 17 modified | TOTAL: 116 pass 2 (xz-): 0 found - 17 modified | TOTAL: 116 Iteration Number : 1 pass 1 (+++): 10 found - 10 modified | TOTAL: 10 pass 2 (+++): 0 found - 10 modified | TOTAL: 10 pass 1 (+++): 16 found - 16 modified | TOTAL: 26 pass 2 (+++): 0 found - 16 modified | TOTAL: 26 pass 1 (+++): 12 found - 12 modified | TOTAL: 38 pass 2 (+++): 0 found - 12 modified | TOTAL: 38 pass 1 (+++): 15 found - 15 modified | TOTAL: 53 pass 2 (+++): 0 found - 15 modified | TOTAL: 53 Iteration Number : 1 pass 1 (++): 110 found - 110 modified | TOTAL: 110 pass 2 (++): 0 found - 110 modified | TOTAL: 110 pass 1 (+-): 76 found - 76 modified | TOTAL: 186 pass 2 (+-): 0 found - 76 modified | TOTAL: 186 pass 1 (--): 61 found - 61 modified | TOTAL: 247 pass 2 (--): 0 found - 61 modified | TOTAL: 247 pass 1 (-+): 76 found - 76 modified | TOTAL: 323 pass 2 (-+): 0 found - 76 modified | TOTAL: 323 Iteration Number : 2 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 1 found - 1 modified | TOTAL: 2 pass 2 (xy-): 0 found - 1 modified | TOTAL: 2 pass 1 (yz+): 2 found - 2 modified | TOTAL: 4 pass 2 (yz+): 0 found - 2 modified | TOTAL: 4 pass 1 (yz-): 2 found - 2 modified | TOTAL: 6 pass 2 (yz-): 0 found - 2 modified | TOTAL: 6 pass 1 (xz+): 0 found - 0 modified | TOTAL: 6 pass 1 (xz-): 0 found - 0 modified | TOTAL: 6 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 0 found - 0 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 503 (out of 656932: 0.076568) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Tue Feb 4 18:32:42 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /opt/freesurfer/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.04481 -0.03097 -0.02641 -2.05336; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73508; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.04481 -0.03097 -0.02641 -2.05336; 0.03275 1.06277 0.36119 -60.45535; 0.01650 -0.33786 0.88639 47.73508; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation Looking for area (min, max) = (350, 1400) area[0] = 997 (min = 350, max = 1400), aspect = 0.51 (min = 0.10, max = 0.75) no need to search using seed (126, 124, 149), TAL = (2.0, 21.0, 4.0) talairach voxel to voxel transform 0.95585 0.03268 0.01516 3.21445; -0.02072 0.83231 -0.33977 66.49448; -0.02569 0.31664 0.99838 -28.56754; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 124, 149) --> (2.0, 21.0, 4.0) done. filling took 0.9 minutes talairach cc position changed to (2.00, 21.00, 4.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, 21.00, 4.00) SRC: (112.76, 116.84, 156.68) search lh wm seed point around talairach space (-16.00, 21.00, 4.00), SRC: (147.17, 116.09, 155.75) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... cp filled.mgz filled.auto.mgz Started at Tue Feb 4 17:24:54 UTC 2025 Ended at Tue Feb 4 18:33:33 UTC 2025 #@#%# recon-all-run-time-hours 1.144 recon-all -s sub-M137 finished without error at Tue Feb 4 18:33:33 UTC 2025 #New# invocation of recon-all Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -parallel -subjid sub-M137 -sd /out/sourcedata/freesurfer -cortribbon subjid sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1048576 memorylocked 8192 kbytes maxproc unlimited maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 12Gi 6.3Gi 115Mi 43Gi 48Gi Swap: 15Gi 3.0Gi 12Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-19:41:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #@# white curv lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area Update not needed #@# pial curv lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial Update not needed #@# pial area lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# area and vertex vol lh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# white curv rh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Feb 4 19:41:47 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Feb 4 19:41:48 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Feb 4 19:41:48 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Feb 4 19:41:48 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #-------------------------------------------- #@# Cortical ribbon mask Tue Feb 4 19:41:48 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-M137 SUBJECTS_DIR is /out/sourcedata/freesurfer loading input data... Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 275 writing volume /out/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz mris_volmask took 11.05 minutes writing ribbon files Started at Tue Feb 4 19:41:47 UTC 2025 Ended at Tue Feb 4 19:52:50 UTC 2025 #@#%# recon-all-run-time-hours 0.184 recon-all -s sub-M137 finished without error at Tue Feb 4 19:52:51 UTC 2025 #New# invocation of recon-all Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon3 -openmp 8 -subjid sub-M137 -sd /out/sourcedata/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nobalabels subjid sub-M137 setenv SUBJECTS_DIR /out/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux ce0d19ffe332 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1048576 memorylocked 8192 kbytes maxproc unlimited maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 17Gi 2.5Gi 127Mi 42Gi 44Gi Swap: 15Gi 3.0Gi 12Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2025/02/04-20:00:14-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: root Machine: ce0d19ffe332 Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# WhiteSurfs lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 8 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot Update not needed #-------------------------------------------- #@# WhiteSurfs rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 8 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot Update not needed #@# white curv lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area Update not needed #@# pial curv lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial Update not needed #@# pial area lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# area and vertex vol lh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# white curv rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Feb 4 20:00:14 UTC 2025 cd /out/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #----------------------------------------- #@# Curvature Stats lh Tue Feb 4 20:00:14 UTC 2025 /out/sourcedata/freesurfer/sub-M137/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-M137 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-M137/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 271 ] Gb_filter = 0 WARN: S lookup min: -0.245964 WARN: S explicit min: 0.000000 vertex = 285 #----------------------------------------- #@# Curvature Stats rh Tue Feb 4 20:00:17 UTC 2025 /out/sourcedata/freesurfer/sub-M137/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-M137 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-M137/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 302 ] Gb_filter = 0 WARN: S lookup min: -0.038300 WARN: S explicit min: 0.000000 vertex = 24 #----------------------------------------- #@# Relabel Hypointensities Tue Feb 4 20:00:19 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 3311 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 2303 voxels changed to hypointensity... 5565 hypointense voxels neighboring cortex changed #----------------------------------------- #@# APas-to-ASeg Tue Feb 4 20:00:31 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /out/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz --threads 8 --lh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /out/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /out/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /out/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /out/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /out/sourcedata/freesurfer outvol aseg.mgz 16 avail.processors, using 8 Loading aseg.presurf.hypos.mgz Loading /out/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Done loading 0 224 32 160 96 192 64 128 65 1 33 225 34 2 193 226 66 35 36 3 227 67 37 194 38 4 228 68 39 195 5 40 229 69 196 41 6 230 42 7 70 231 197 43 8 232 44 9 71 198 233 45 10 234 46 199 11 72 235 47 12 236 200 48 13 237 49 14 201 238 50 15 239 51 73 202 16 240 52 17 241 161 203 53 18 97 242 54 204 19 243 55 20 244 205 56 74 21 245 57 22 246 206 58 23 247 59 24 207 248 60 25 249 208 61 26 250 62 27 75 209 251 63 28 252 29 210 253 30 254 31 211 255 212 129 76 213 214 162 215 98 216 77 217 218 219 220 221 222 223 78 99 79 163 100 80 130 81 101 82 164 102 83 131 103 84 165 104 85 105 86 132 166 106 87 88 107 108 167 89 133 109 90 110 91 168 111 134 92 112 93 169 113 94 135 95 170 114 171 115 136 172 116 173 137 117 174 118 175 176 138 119 177 178 120 179 139 121 180 181 122 182 140 123 183 184 185 186 124 187 188 189 190 191 125 141 126 142 127 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 nrelabeled = 207513 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1473468 mri_surf2volseg done mri_brainvol_stats sub-M137 ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1591339.0 #CBVS2 BrainSegVol 1283179.0 #CBVS2 BrainSegVolNotVent 1262179.0 #CBVS2 SupraTentVol 1130997.0 #CBVS2 SupraTentVolNotVent 1109997.0 #CBVS2 lhCtxGM 251469.0 #CBVS2 rhCtxGM 262251.2 #CBVS2 lhCerebralWM 260487.0 #CBVS2 rhCerebralWM 275078.0 #CBVS2 SubCortGMVol 63664.0 #CBVS2 CerebellumVol 152182.0 #CBVS2 CerebellumGMVol 119501.0 #CBVS2 VentChorVol 16232.0 #CBVS2 3rd4th5thCSF 4768.0 #CBVS2 AllCSF 21000.0 #CBVS2 CCVol 4576.0 #----------------------------------------- #@# AParc-to-ASeg aparc Tue Feb 4 20:00:46 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 8 --lh-annot /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot 1000 --lh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /out/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /out/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot 2000 --rh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /out/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /out/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /out/sourcedata/freesurfer outvol aparc+aseg.mgz 16 avail.processors, using 8 Loading aseg.mgz Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8534 vertices from lh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8745 vertices from rh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot Done loading 0 96 192 224 160 32 128 64 1 33 225 34 2 226 35 3 227 4 36 228 37 5 229 38 6 230 39 7 231 40 8 232 41 9 233 42 10 234 11 43 235 12 44 236 13 45 237 14 46 238 15 239 47 16 240 48 17 241 49 50 18 242 51 19 243 52 20 244 53 21 245 54 22 246 55 23 247 56 24 248 57 25 249 58 26 250 59 27 251 60 28 252 65 61 29 253 62 30 254 31 255 63 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 66 223 67 161 129 97 68 162 130 69 98 70 131 163 99 71 164 132 72 100 165 73 101 133 166 102 74 134 167 103 75 168 104 135 76 169 105 77 136 170 78 106 171 137 79 172 107 173 138 80 108 174 109 139 81 175 110 82 140 176 111 177 112 83 141 178 113 84 142 114 179 85 143 115 180 144 86 116 181 145 87 182 117 146 183 88 118 147 184 89 148 185 119 149 186 90 187 150 120 188 151 91 189 121 190 152 191 92 153 122 154 93 123 155 94 156 124 157 95 158 125 159 126 127 nrelabeled = 510728 ndotcheck = 19029 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1457884 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Tue Feb 4 20:01:36 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 8 --lh-annot /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /out/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /out/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /out/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /out/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /out/sourcedata/freesurfer outvol aparc.a2009s+aseg.mgz 16 avail.processors, using 8 Loading aseg.mgz Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8534 vertices from lh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.a2009s.annot Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8745 vertices from rh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.a2009s.annot Done loading 0 192 224 32 96 64 128 160 1 33 225 34 2 226 35 3 227 36 4 228 37 5 229 38 6 230 39 7 231 40 8 232 41 9 233 42 10 43 234 11 44 235 12 45 236 13 46 237 14 47 238 15 48 16 239 49 17 240 50 18 193 241 51 19 52 242 20 53 243 21 54 244 22 55 245 23 56 246 24 194 57 25 247 58 195 59 26 196 248 60 27 197 249 61 28 198 250 29 62 199 251 30 200 252 201 31 63 253 202 254 203 255 204 205 206 207 208 209 210 211 65 212 213 214 215 216 217 218 219 220 221 222 223 66 161 67 129 97 68 162 130 69 98 163 70 131 99 71 164 132 72 100 165 101 73 133 166 102 74 134 167 103 75 168 135 104 76 169 136 105 170 77 171 106 78 137 172 107 79 173 138 108 174 80 139 175 109 81 176 110 140 177 82 111 141 112 178 83 142 113 179 84 143 114 180 85 144 115 181 145 116 182 86 146 183 117 87 147 184 148 118 88 185 186 149 89 187 119 150 188 90 151 189 120 190 152 191 91 121 153 154 92 122 155 93 123 156 157 94 124 158 95 159 125 126 127 nrelabeled = 510728 ndotcheck = 19029 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1457972 mri_surf2volseg done #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Tue Feb 4 20:02:26 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 8 --lh-annot /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /out/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /out/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /out/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /out/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /out/sourcedata/freesurfer outvol aparc.DKTatlas+aseg.mgz 16 avail.processors, using 8 Loading aseg.mgz Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8534 vertices from lh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.DKTatlas.annot Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8745 vertices from rh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.DKTatlas.annot Done loading 0 160 96 224 128 192 32 64 33 225 1 226 34 2 227 35 3 228 36 4 229 37 5 230 38 6 231 39 7 40 232 41 8 233 42 9 234 43 10 235 44 11 236 45 12 237 46 13 238 47 14 239 48 15 240 16 49 241 50 17 242 51 18 243 52 19 244 53 20 245 21 54 246 55 22 247 56 23 248 57 24 249 58 25 250 59 26 251 65 193 60 27 252 28 61 253 29 62 254 30 255 63 31 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 66 67 161 129 97 68 162 130 69 98 70 163 131 99 71 164 72 132 100 165 73 101 133 166 102 74 134 167 103 75 168 135 104 76 169 105 136 170 77 171 78 106 137 172 79 107 173 138 80 108 174 139 175 109 81 110 176 140 82 111 177 141 112 83 178 142 113 84 179 143 114 180 85 144 115 181 86 145 116 182 146 87 183 117 147 184 88 118 148 185 186 89 149 187 119 150 188 90 189 151 120 190 91 152 191 121 153 92 122 154 155 93 123 156 94 157 124 158 95 159 125 126 127 nrelabeled = 510728 ndotcheck = 19029 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1457884 mri_surf2volseg done #----------------------------------------- #@# WMParc Tue Feb 4 20:03:17 UTC 2025 /out/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 8 --lh-annot /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot 3000 --lh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /out/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /out/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot 4000 --rh-cortex-mask /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /out/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /out/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /out/sourcedata/freesurfer outvol wmparc.mgz 16 avail.processors, using 8 Loading aparc+aseg.mgz Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8534 vertices from lh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /out/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /out/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8745 vertices from rh hemi Loading /out/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot Done loading 0 32 96 64 192 160 224 128 1 33 65 193 225 34 2 194 226 35 3 195 227 36 4 196 228 37 5 197 229 38 6 198 230 66 39 7 199 231 40 8 200 232 41 9 201 233 42 10 202 234 43 11 203 235 44 12 204 236 45 13 237 205 67 46 14 206 238 47 15 239 207 16 48 208 240 49 17 241 209 50 18 210 242 51 19 211 243 52 20 212 244 53 213 21 245 22 214 246 54 23 215 247 55 24 248 216 56 25 217 249 68 57 26 218 250 58 27 251 219 59 28 220 252 60 29 221 253 61 30 222 254 62 31 223 255 63 69 70 129 161 71 130 97 72 131 73 132 74 162 98 133 75 134 76 163 99 77 135 164 78 136 100 79 165 137 80 101 166 81 138 167 82 102 139 168 83 103 84 169 140 104 85 170 141 86 171 105 172 87 142 173 88 106 174 89 143 175 107 90 176 144 91 177 108 178 92 179 145 93 180 109 181 182 94 183 146 184 110 95 185 186 187 188 189 190 191 147 111 148 112 149 113 150 114 151 115 152 116 153 117 154 118 155 119 156 120 157 121 158 122 159 123 124 125 126 127 nrelabeled = 530989 ndotcheck = 5324 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1457884 mri_surf2volseg done mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-M137 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv setting seed for random number genererator to 1234 7.3.2 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-M137 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname ce0d19ffe332 machine x86_64 user root whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done #-------------------------------------------- #@# ASeg Stats Tue Feb 4 20:06:11 UTC 2025 /out/sourcedata/freesurfer/sub-M137 mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-M137 setting seed for random number genererator to 1234 7.3.2 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-M137 sysname Linux hostname ce0d19ffe332 machine x86_64 user root whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) Computing euler number orig.nofix lheno = -52, rheno = -48 orig.nofix lhholes = 27, rhholes = 25 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done Started at Tue Feb 4 20:00:14 UTC 2025 Ended at Tue Feb 4 20:06:38 UTC 2025 #@#%# recon-all-run-time-hours 0.107 recon-all -s sub-M137 finished without error at Tue Feb 4 20:06:38 UTC 2025 #New# invocation of recon-all Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer /home/tonglab/freesurfer/bin/recon-all -sd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer -wsthresh 25 -clean-bm -no-wsgcaatlas -subjid sub-M137 subjid sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Actual FREESURFER_HOME /home/tonglab/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 Linux leia 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8204532 kbytes maxproc 256092 maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 2.8Gi 55Gi 89Mi 4.2Gi 59Gi Swap: 15Gi 0B 15Gi ######################################## program versions used 7.4.1 (freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460) 7.4.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.4.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:21:35-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/tonglab/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/tonglab/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/brainmask.mgz /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/trash #@# white curv lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area Update not needed #@# pial curv lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial Update not needed #@# pial area lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# area and vertex vol lh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# white curv rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Feb 18 10:21:35 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed Started at Tue Feb 18 10:21:35 CST 2025 Ended at Tue Feb 18 10:21:35 CST 2025 #@#%# recon-all-run-time-hours 0.000 recon-all -s sub-M137 finished without error at Tue Feb 18 10:21:35 CST 2025 #New# invocation of recon-all Tue Feb 18 10:26:53 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer /home/tonglab/freesurfer/bin/recon-all -sd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer -skullstrip -wsthresh 25 -clean-bm -no-wsgcaatlas -subjid sub-M137 subjid sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Actual FREESURFER_HOME /home/tonglab/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 Linux leia 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8204532 kbytes maxproc 256092 maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 2.8Gi 55Gi 89Mi 4.3Gi 59Gi Swap: 15Gi 0B 15Gi ######################################## program versions used 7.4.1 (freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460) 7.4.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.4.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:26:53-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/tonglab/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/tonglab/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/brainmask.mgz /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/trash #-------------------------------------------- #@# Skull Stripping Tue Feb 18 10:26:53 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_watershed -T1 -h 25 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz *************************WATERSHED************************** Sorting... T1-weighted MRI image modification of the preflooding height to 15 percent Count how many 110 voxels are present : 296186 Find the largest 110-component... heap usage = 488564 Kbytes. current max segment has 275696 voxels removing small segments (less than 1 percent of maxarea). heap usage = 120484 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 275696 voxels first estimation of the COG coord: x=126 y=122 z=113 r=80 first estimation of the main basin volume: 2201896 voxels global maximum in x=148, y=102, z=75, Imax=255 CSF=25, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 15 percent done. Analyze... main basin size= 1761371 voxels, voxel volume =1.000 = 1761371 mmm3 = 1761.371 cm3 done. PostAnalyze... ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin ambiguous basin, non merged: 4 ambiguous voxels; size: 147 voxels done. ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=128,y=128, z=110, r=10661 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=12, CSF_MAX=40 , nb = 45378 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 40, 32, 21, 63 after analyzing : 27, 32, 32, 39 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...63 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.010 curvature mean = 73.188, std = 8.253 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 3.35, sigma = 5.85 after rotation: sse = 3.35, sigma = 5.85 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 3.90, its var is 5.99 before Erosion-Dilatation 1.76% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...28 iterations mri_strip_skull: done peeling brain Brain Size = 1794750 voxels, voxel volume = 1.000 mm3 = 1794750 mmm3 = 1794.750 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed done @#@FSTIME 2025:02:18:10:26:53 mri_watershed N 5 e 6.42 S 0.19 U 6.19 P 99% M 452440 F 10 R 190407 W 0 c 38 w 77 I 9712 O 2888 L 0.53 0.43 0.47 @#@FSLOADPOST 2025:02:18:10:26:59 mri_watershed N 5 0.56 0.44 0.48 cp brainmask.auto.mgz brainmask.mgz #@# white curv lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv Update not needed #@# white area lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area Update not needed #@# pial curv lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial Update not needed #@# pial area lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial Update not needed #@# thickness lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# area and vertex vol lh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness Update not needed #@# white curv rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv Update not needed #@# white area rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area Update not needed #@# pial curv rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial Update not needed #@# pial area rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial Update not needed #@# thickness rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed #@# area and vertex vol rh Tue Feb 18 10:27:00 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness Update not needed Started at Tue Feb 18 10:26:53 CST 2025 Ended at Tue Feb 18 10:27:00 CST 2025 #@#%# recon-all-run-time-hours 0.002 recon-all -s sub-M137 finished without error at Tue Feb 18 10:27:00 CST 2025 #New# invocation of recon-all Tue Feb 18 10:30:43 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer /home/tonglab/freesurfer/bin/recon-all -sd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer -autorecon-pial -subjid sub-M137 subjid sub-M137 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Actual FREESURFER_HOME /home/tonglab/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 Linux leia 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 8204532 kbytes maxproc 256092 maxlocks unlimited maxsignal 256092 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 62Gi 2.8Gi 55Gi 89Mi 4.3Gi 59Gi Swap: 15Gi 0B 15Gi ######################################## program versions used 7.4.1 (freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460) 7.4.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.4.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2025/02/18-16:30:43-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: tonglab Machine: leia Platform: Linux PlatformVersion: 6.5.0-27-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/tonglab/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/tonglab/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Mask BFS Tue Feb 18 10:30:43 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1767670 voxels in mask (pct= 10.54) maskval=0, outval=0 Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2025:02:18:10:30:43 mri_mask N 5 e 0.91 S 0.01 U 0.87 P 98% M 74240 F 5 R 17254 W 0 c 4 w 6 I 1024 O 2560 L 0.26 0.33 0.42 @#@FSLOADPOST 2025:02:18:10:30:44 mri_mask N 5 0.26 0.33 0.42 cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz #-------------------------------------------- #@# AutoDetGWStats lh Tue Feb 18 10:30:44 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 304882 voxels (1.82%) border gray 332734 voxels (1.98%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (98.0): 97.8 +- 9.1 [70.0 --> 110.0] CCS GM (69.0) : 67.4 +- 13.3 [30.0 --> 110.0] white_mean = 97.8427 +/- 9.05553, gray_mean = 67.4174 +/- 13.2531 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=255 nbins=256 intensity peaks found at WM=103+-7.0, GM=64+-16.5 white_mode = 103, gray_mode = 64 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 50.7 (was 70.000000) setting MAX_BORDER_WHITE to 112.1 (was 105.000000) setting MIN_BORDER_WHITE to 64.0 (was 85.000000) setting MAX_CSF to 37.5 (was 40.000000) setting MAX_GRAY to 93.9 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 50.7 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 24.2 (was 40.000000) When placing the white surface white_border_hi = 112.056; white_border_low = 64; white_outside_low = 50.7469; white_inside_hi = 120; white_outside_hi = 112.056; When placing the pial surface pial_border_hi = 50.7469; pial_border_low = 24.2408; pial_outside_low = 10; pial_inside_hi = 93.9445; pial_outside_hi = 44.1204; #VMPC# mris_autodet_gwstats VmPeak 287732 mris_autodet_gwstats done @#@FSTIME 2025:02:18:10:30:44 mris_autodet_gwstats N 8 e 3.25 S 0.10 U 3.11 P 98% M 270296 F 24 R 85020 W 0 c 11 w 23 I 15576 O 8 L 0.26 0.33 0.42 @#@FSLOADPOST 2025:02:18:10:30:47 mris_autodet_gwstats N 8 0.32 0.34 0.42 #-------------------------------------------- #@# AutoDetGWStats rh Tue Feb 18 10:30:47 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 304882 voxels (1.82%) border gray 332734 voxels (1.98%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (98.0): 97.8 +- 9.1 [70.0 --> 110.0] CCS GM (69.0) : 67.4 +- 13.3 [30.0 --> 110.0] white_mean = 97.8427 +/- 9.05553, gray_mean = 67.4174 +/- 13.2531 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=255 nbins=256 intensity peaks found at WM=103+-7.0, GM=64+-11.3 white_mode = 103, gray_mode = 64 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 50.7 (was 70.000000) setting MAX_BORDER_WHITE to 112.1 (was 105.000000) setting MIN_BORDER_WHITE to 64.0 (was 85.000000) setting MAX_CSF to 37.5 (was 40.000000) setting MAX_GRAY to 93.9 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 50.7 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 24.2 (was 40.000000) When placing the white surface white_border_hi = 112.056; white_border_low = 64; white_outside_low = 50.7469; white_inside_hi = 120; white_outside_hi = 112.056; When placing the pial surface pial_border_hi = 50.7469; pial_border_low = 24.2408; pial_outside_low = 10; pial_inside_hi = 93.9445; pial_outside_hi = 44.1204; #VMPC# mris_autodet_gwstats VmPeak 296052 mris_autodet_gwstats done @#@FSTIME 2025:02:18:10:30:47 mris_autodet_gwstats N 8 e 3.32 S 0.09 U 3.20 P 99% M 278464 F 0 R 85981 W 0 c 95 w 4 I 11432 O 8 L 0.32 0.34 0.42 @#@FSLOADPOST 2025:02:18:10:30:51 mris_autodet_gwstats N 8 0.32 0.34 0.42 #-------------------------------------------- #@# WhitePreAparc lh Tue Feb 18 10:30:51 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/lh.orig Smoothing surface before ripping with 5 iterations Area 326004 0.27150 0.06291 0.000077 0.5740 Corner 978012 60.00000 9.40821 1.193443 161.8064 Edge 489006 0.79569 0.11341 0.013720 1.3208 Hinge 489006 6.33302 6.33651 0.000017 149.8934 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6770, nmarked2=20, nripped=6770 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 81502: xyz = (-52.7092,-8.47733,5.71158) oxyz = (-52.7092,-8.47733,5.71158) wxzy = (-52.7092,-8.47733,5.71158) pxyz = (0,0,0) CBVO Creating mask 163004 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6770 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6770, nmarked2=20, nripped=6770 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=2 had to be increased for 635 vertices, nripped=6770 mean border=78.9, 932 (932) missing vertices, mean dist 0.1 [0.8 (%42.0)->0.8 (%58.0))] %40 local maxima, %56 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1724 min Finding expansion regions mean absolute distance = 0.82 +- 1.12 4555 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=6378786.5, rms=14.124 001: dt: 0.5000, sse=3214886.2, rms=9.882 (30.038%) 002: dt: 0.5000, sse=1889547.2, rms=7.409 (25.028%) 003: dt: 0.5000, sse=1377885.0, rms=6.140 (17.129%) 004: dt: 0.5000, sse=1129203.8, rms=5.430 (11.553%) 005: dt: 0.5000, sse=1004521.6, rms=5.033 (7.315%) 006: dt: 0.5000, sse=941655.6, rms=4.813 (4.379%) 007: dt: 0.5000, sse=908638.6, rms=4.686 (2.625%) 008: dt: 0.5000, sse=895606.2, rms=4.621 (1.399%) 009: dt: 0.5000, sse=893957.0, rms=4.558 (1.350%) rms = 4.5298/4.5584, sse=874827.9/893957.0, time step reduction 1 of 3 to 0.250 0 0 1 010: dt: 0.5000, sse=874827.9, rms=4.530 (0.629%) 011: dt: 0.2500, sse=561481.2, rms=3.213 (29.071%) 012: dt: 0.2500, sse=480445.6, rms=2.898 (9.811%) 013: dt: 0.2500, sse=464976.8, rms=2.822 (2.629%) 014: dt: 0.2500, sse=452035.8, rms=2.760 (2.165%) rms = 2.7248/2.7604, sse=457386.5/452035.7, time step reduction 2 of 3 to 0.125 0 1 1 015: dt: 0.2500, sse=457386.5, rms=2.725 (1.289%) 016: dt: 0.1250, sse=413593.2, rms=2.471 (9.298%) rms = 2.4263/2.4715, sse=402145.2/413593.2, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=402145.2, rms=2.426 (1.830%) maximum number of reductions reached, breaking from loop positioning took 1.4 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6770 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7216, nmarked2=157, nripped=7216 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=1 had to be increased for 752 vertices, nripped=7216 mean border=82.0, 911 (716) missing vertices, mean dist -0.3 [0.6 (%66.0)->0.2 (%34.0))] %49 local maxima, %46 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1172 min Finding expansion regions mean absolute distance = 0.47 +- 0.89 5915 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1298894.2, rms=5.746 018: dt: 0.5000, sse=1023471.1, rms=4.817 (16.170%) rms = 4.8567/4.8172, sse=1053516.0/1023471.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=797042.4, rms=4.051 (15.912%) 020: dt: 0.2500, sse=713709.8, rms=3.592 (11.314%) 021: dt: 0.2500, sse=659131.4, rms=3.362 (6.409%) 022: dt: 0.2500, sse=641546.9, rms=3.243 (3.537%) 023: dt: 0.2500, sse=611398.4, rms=3.163 (2.462%) 024: dt: 0.2500, sse=586905.9, rms=3.102 (1.940%) rms = 3.0703/3.1020, sse=594174.1/586905.9, time step reduction 2 of 3 to 0.125 0 1 1 025: dt: 0.2500, sse=594174.1, rms=3.070 (1.020%) 026: dt: 0.1250, sse=565675.9, rms=2.940 (4.252%) rms = 2.9119/2.9398, sse=559913.5/565675.9, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=559913.5, rms=2.912 (0.949%) maximum number of reductions reached, breaking from loop positioning took 0.9 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7216 removing 1 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7270, nmarked2=157, nripped=7270 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 879 vertices, nripped=7270 mean border=85.2, 900 (635) missing vertices, mean dist -0.3 [0.5 (%68.9)->0.2 (%31.1))] %67 local maxima, %28 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0663 min Finding expansion regions mean absolute distance = 0.40 +- 0.62 6058 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1238150.4, rms=5.527 028: dt: 0.5000, sse=989100.8, rms=4.679 (15.350%) rms = 4.8529/4.6788, sse=1078555.4/989100.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 029: dt: 0.2500, sse=773472.1, rms=3.921 (16.204%) 030: dt: 0.2500, sse=713259.0, rms=3.540 (9.719%) 031: dt: 0.2500, sse=692536.2, rms=3.421 (3.347%) rms = 3.3828/3.4212, sse=666564.3/692536.2, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=666564.3, rms=3.383 (1.121%) 033: dt: 0.1250, sse=662681.9, rms=3.270 (3.341%) rms = 3.2417/3.2698, sse=637107.2/662681.9, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=637107.2, rms=3.242 (0.858%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7270 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7341, nmarked2=157, nripped=7341 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 695 vertices, nripped=7341 mean border=86.5, 979 (600) missing vertices, mean dist -0.1 [0.4 (%58.9)->0.2 (%41.1))] %74 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0427 min Finding expansion regions mean absolute distance = 0.30 +- 0.49 5338 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=778806.4, rms=3.909 rms = 4.1444/3.9095, sse=887268.8/778806.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=676475.9, rms=3.511 (10.182%) 036: dt: 0.2500, sse=663340.9, rms=3.297 (6.111%) rms = 3.2968/3.2968, sse=650507.1/663341.0, time step reduction 2 of 3 to 0.125 0 0 1 037: dt: 0.2500, sse=650507.1, rms=3.297 (0.000%) rms = 3.2573/3.2968, sse=635167.7/650507.1, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=635167.8, rms=3.257 (1.198%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Removing intersections #ET# mris_place_surface 3.72 minutes Writing output to ../surf/lh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2452392 mris_place_surface done @#@FSTIME 2025:02:18:10:30:51 mris_place_surface N 18 e 229.81 S 0.60 U 229.14 P 99% M 2195852 F 12 R 575828 W 0 c 1171 w 13 I 14144 O 11464 L 0.32 0.34 0.42 @#@FSLOADPOST 2025:02:18:10:34:41 mris_place_surface N 18 1.21 0.83 0.62 #-------------------------------------------- #@# WhitePreAparc rh Tue Feb 18 10:34:41 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/rh.orig Smoothing surface before ripping with 5 iterations Area 338514 0.27024 0.06239 0.002818 0.5937 Corner 1015542 60.00000 9.30210 5.345177 159.8494 Edge 507771 0.79365 0.11264 0.062451 1.3649 Hinge 507771 6.33614 6.27846 0.000010 163.5585 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 #FML# MRISripMidline(): nmarked=6748, nmarked2=5, nripped=6748 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 84630: xyz = (20.2349,-5.22536,52.7871) oxyz = (20.2349,-5.22536,52.7871) wxzy = (20.2349,-5.22536,52.7871) pxyz = (0,0,0) CBVO Creating mask 169259 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6748 #FML# MRISripMidline(): nmarked=6748, nmarked2=5, nripped=6748 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=2 had to be increased for 131 vertices, nripped=6748 mean border=78.3, 80 (80) missing vertices, mean dist 0.2 [0.7 (%37.4)->0.8 (%62.6))] %52 local maxima, %44 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1879 min Finding expansion regions mean absolute distance = 0.74 +- 0.97 4504 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=5019496.5, rms=12.194 001: dt: 0.5000, sse=2599654.2, rms=8.622 (29.295%) 002: dt: 0.5000, sse=1555384.2, rms=6.497 (24.649%) 003: dt: 0.5000, sse=1080478.4, rms=5.247 (19.241%) 004: dt: 0.5000, sse=854618.2, rms=4.530 (13.667%) 005: dt: 0.5000, sse=745603.6, rms=4.116 (9.138%) 006: dt: 0.5000, sse=689043.4, rms=3.915 (4.877%) 007: dt: 0.5000, sse=664337.1, rms=3.796 (3.031%) rms = 3.7508/3.7963, sse=653191.0/664337.1, time step reduction 1 of 3 to 0.250 0 0 1 008: dt: 0.5000, sse=653191.0, rms=3.751 (1.198%) 009: dt: 0.2500, sse=367039.1, rms=2.270 (39.489%) 010: dt: 0.2500, sse=311925.2, rms=1.878 (17.274%) 011: dt: 0.2500, sse=300267.8, rms=1.773 (5.584%) 012: dt: 0.2500, sse=293258.2, rms=1.701 (4.053%) rms = 1.6734/1.7009, sse=293139.8/293258.2, time step reduction 2 of 3 to 0.125 0 0 1 013: dt: 0.2500, sse=293139.8, rms=1.673 (1.620%) 014: dt: 0.1250, sse=267041.2, rms=1.428 (14.686%) rms = 1.3905/1.4276, sse=263639.8/267041.2, time step reduction 3 of 3 to 0.062 0 0 1 015: dt: 0.1250, sse=263639.8, rms=1.390 (2.602%) maximum number of reductions reached, breaking from loop positioning took 1.3 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6748 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6931, nmarked2=5, nripped=6931 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=1 had to be increased for 187 vertices, nripped=6931 mean border=81.7, 150 (45) missing vertices, mean dist -0.3 [0.5 (%68.2)->0.2 (%31.8))] %60 local maxima, %35 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1285 min Finding expansion regions mean absolute distance = 0.44 +- 0.80 6468 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1186671.4, rms=5.356 016: dt: 0.5000, sse=747372.8, rms=3.890 (27.367%) 017: dt: 0.5000, sse=731221.6, rms=3.839 (1.327%) 018: dt: 0.5000, sse=693387.4, rms=3.675 (4.253%) rms = 3.7748/3.6754, sse=716659.1/693387.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=449999.9, rms=2.451 (33.318%) 020: dt: 0.2500, sse=364779.0, rms=1.844 (24.741%) 021: dt: 0.2500, sse=335177.1, rms=1.579 (14.404%) 022: dt: 0.2500, sse=327941.2, rms=1.470 (6.919%) 023: dt: 0.2500, sse=322513.8, rms=1.395 (5.064%) rms = 1.3632/1.3951, sse=318034.4/322513.8, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=318034.4, rms=1.363 (2.287%) 025: dt: 0.1250, sse=303159.6, rms=1.174 (13.905%) rms = 1.1424/1.1737, sse=301206.6/303159.6, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=301206.6, rms=1.142 (2.660%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6931 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6982, nmarked2=5, nripped=6982 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 305 vertices, nripped=6982 mean border=84.9, 159 (34) missing vertices, mean dist -0.2 [0.4 (%71.9)->0.2 (%28.1))] %77 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0743 min Finding expansion regions mean absolute distance = 0.36 +- 0.54 6558 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=922440.8, rms=4.543 027: dt: 0.5000, sse=638763.9, rms=3.381 (25.582%) rms = 3.5467/3.3806, sse=681028.2/638763.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=429638.2, rms=2.292 (32.188%) 029: dt: 0.2500, sse=346724.0, rms=1.624 (29.179%) 030: dt: 0.2500, sse=328113.1, rms=1.381 (14.967%) 031: dt: 0.2500, sse=324736.3, rms=1.307 (5.358%) rms = 1.2964/1.3066, sse=325688.6/324736.3, time step reduction 2 of 3 to 0.125 0 1 1 032: dt: 0.2500, sse=325688.6, rms=1.296 (0.781%) 033: dt: 0.1250, sse=315001.8, rms=1.069 (17.565%) rms = 1.0340/1.0687, sse=299869.0/315001.8, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=299869.0, rms=1.034 (3.240%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6982 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7000, nmarked2=5, nripped=7000 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 312 vertices, nripped=7000 mean border=86.1, 191 (31) missing vertices, mean dist -0.1 [0.3 (%60.5)->0.2 (%39.5))] %83 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0475 min Finding expansion regions mean absolute distance = 0.27 +- 0.43 6055 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=411127.4, rms=2.157 rms = 2.3812/2.1570, sse=465691.7/411127.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=329425.0, rms=1.442 (33.148%) 036: dt: 0.2500, sse=294782.2, rms=0.905 (37.254%) rms = 0.8930/0.9048, sse=302501.8/294782.3, time step reduction 2 of 3 to 0.125 0 1 1 037: dt: 0.2500, sse=302501.8, rms=0.893 (1.310%) 038: dt: 0.1250, sse=290869.0, rms=0.804 (9.969%) rms = 0.7762/0.8039, sse=287429.2/290869.0, time step reduction 3 of 3 to 0.062 0 0 1 039: dt: 0.1250, sse=287429.2, rms=0.776 (3.454%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Removing intersections #ET# mris_place_surface 3.95 minutes Writing output to ../surf/rh.white.preaparc #VMPC# mris_place_surfaces VmPeak 2508256 mris_place_surface done @#@FSTIME 2025:02:18:10:34:41 mris_place_surface N 18 e 243.40 S 0.73 U 242.61 P 99% M 2252072 F 0 R 589759 W 0 c 1264 w 5 I 11904 O 11904 L 1.21 0.83 0.62 @#@FSLOADPOST 2025:02:18:10:38:44 mris_place_surface N 18 1.18 1.03 0.76 #-------------------------------------------- #@# CortexLabel lh Tue Feb 18 10:38:44 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 0 ../label/lh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 14 non-cortical segments detected only using segment with 8279 vertices erasing segment 0 (vno[0] = 33216) erasing segment 2 (vno[0] = 57648) erasing segment 3 (vno[0] = 60396) erasing segment 4 (vno[0] = 78957) erasing segment 5 (vno[0] = 79412) erasing segment 6 (vno[0] = 80843) erasing segment 7 (vno[0] = 83119) erasing segment 8 (vno[0] = 84488) erasing segment 9 (vno[0] = 87917) erasing segment 10 (vno[0] = 93459) erasing segment 11 (vno[0] = 95949) erasing segment 12 (vno[0] = 96883) erasing segment 13 (vno[0] = 98574) @#@FSTIME 2025:02:18:10:38:44 mri_label2label N 5 e 13.91 S 0.15 U 13.75 P 99% M 406852 F 13 R 120801 W 0 c 54 w 9 I 1752 O 13536 L 1.18 1.03 0.76 @#@FSLOADPOST 2025:02:18:10:38:58 mri_label2label N 5 1.29 1.06 0.77 #-------------------------------------------- #@# CortexLabel+HipAmyg lh Tue Feb 18 10:38:58 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 14 non-cortical segments detected only using segment with 6242 vertices erasing segment 0 (vno[0] = 33216) erasing segment 2 (vno[0] = 57648) erasing segment 3 (vno[0] = 60396) erasing segment 4 (vno[0] = 66471) erasing segment 5 (vno[0] = 69286) erasing segment 6 (vno[0] = 73176) erasing segment 7 (vno[0] = 79412) erasing segment 8 (vno[0] = 79864) erasing segment 9 (vno[0] = 83119) erasing segment 10 (vno[0] = 87917) erasing segment 11 (vno[0] = 93459) erasing segment 12 (vno[0] = 96883) erasing segment 13 (vno[0] = 98574) @#@FSTIME 2025:02:18:10:38:58 mri_label2label N 5 e 13.53 S 0.10 U 13.42 P 99% M 407112 F 0 R 123617 W 0 c 52 w 1 I 0 O 13688 L 1.29 1.06 0.77 @#@FSLOADPOST 2025:02:18:10:39:12 mri_label2label N 5 1.39 1.09 0.79 #-------------------------------------------- #@# CortexLabel rh Tue Feb 18 10:39:12 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 0 ../label/rh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 14 non-cortical segments detected only using segment with 8419 vertices erasing segment 0 (vno[0] = 47218) erasing segment 1 (vno[0] = 52165) erasing segment 3 (vno[0] = 53168) erasing segment 4 (vno[0] = 54042) erasing segment 5 (vno[0] = 57129) erasing segment 6 (vno[0] = 62632) erasing segment 7 (vno[0] = 75714) erasing segment 8 (vno[0] = 82857) erasing segment 9 (vno[0] = 91700) erasing segment 10 (vno[0] = 93704) erasing segment 11 (vno[0] = 104416) erasing segment 12 (vno[0] = 109029) erasing segment 13 (vno[0] = 165356) @#@FSTIME 2025:02:18:10:39:12 mri_label2label N 5 e 14.33 S 0.15 U 14.14 P 99% M 416964 F 0 R 127007 W 0 c 69 w 2 I 0 O 13752 L 1.39 1.09 0.79 @#@FSLOADPOST 2025:02:18:10:39:26 mri_label2label N 5 1.31 1.09 0.79 #-------------------------------------------- #@# CortexLabel+HipAmyg rh Tue Feb 18 10:39:26 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 20 non-cortical segments detected only using segment with 6225 vertices erasing segment 0 (vno[0] = 47218) erasing segment 1 (vno[0] = 52165) erasing segment 3 (vno[0] = 53168) erasing segment 4 (vno[0] = 54042) erasing segment 5 (vno[0] = 57129) erasing segment 6 (vno[0] = 60564) erasing segment 7 (vno[0] = 62632) erasing segment 8 (vno[0] = 73139) erasing segment 9 (vno[0] = 75714) erasing segment 10 (vno[0] = 82857) erasing segment 11 (vno[0] = 91700) erasing segment 12 (vno[0] = 93704) erasing segment 13 (vno[0] = 103503) erasing segment 14 (vno[0] = 104416) erasing segment 15 (vno[0] = 109029) erasing segment 16 (vno[0] = 139100) erasing segment 17 (vno[0] = 146943) erasing segment 18 (vno[0] = 158878) erasing segment 19 (vno[0] = 165356) @#@FSTIME 2025:02:18:10:39:26 mri_label2label N 5 e 14.34 S 0.18 U 14.15 P 99% M 452808 F 0 R 135986 W 0 c 56 w 1 I 0 O 13928 L 1.31 1.09 0.79 @#@FSLOADPOST 2025:02:18:10:39:40 mri_label2label N 5 1.24 1.08 0.80 #-------------------------------------------- #@# Smooth2 lh Tue Feb 18 10:39:40 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:02:18:10:39:40 mris_smooth N 7 e 2.55 S 0.07 U 2.46 P 99% M 249096 F 6 R 75410 W 0 c 19 w 4 I 600 O 11464 L 1.24 1.08 0.80 @#@FSLOADPOST 2025:02:18:10:39:43 mris_smooth N 7 1.24 1.08 0.80 #-------------------------------------------- #@# Smooth2 rh Tue Feb 18 10:39:43 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2025:02:18:10:39:43 mris_smooth N 7 e 2.70 S 0.11 U 2.58 P 99% M 258356 F 0 R 78273 W 0 c 10 w 2 I 0 O 11904 L 1.24 1.08 0.80 @#@FSLOADPOST 2025:02:18:10:39:46 mris_smooth N 7 1.22 1.08 0.80 #-------------------------------------------- #@# Inflation2 lh Tue Feb 18 10:39:46 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 50.7 mm, total surface area = 98416 mm^2 step 000: RMS=0.166 (target=0.015) step 005: RMS=0.113 (target=0.015) step 010: RMS=0.085 (target=0.015) step 015: RMS=0.071 (target=0.015) step 020: RMS=0.060 (target=0.015) step 025: RMS=0.049 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.030 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.023 (target=0.015) step 055: RMS=0.021 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 18.300036 mris_inflate stimesec 0.735840 mris_inflate ru_maxrss 249348 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 632622 mris_inflate ru_majflt 24 mris_inflate ru_nswap 0 mris_inflate ru_inblock 4568 mris_inflate ru_oublock 12752 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 22 mris_inflate ru_nivcsw 92 @#@FSTIME 2025:02:18:10:39:46 mris_inflate N 2 e 19.09 S 0.74 U 18.30 P 99% M 249348 F 24 R 632627 W 0 c 92 w 23 I 4568 O 12752 L 1.22 1.08 0.80 @#@FSLOADPOST 2025:02:18:10:40:05 mris_inflate N 2 1.30 1.11 0.82 #-------------------------------------------- #@# Inflation2 rh Tue Feb 18 10:40:05 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 50.2 mm, total surface area = 101217 mm^2 step 000: RMS=0.167 (target=0.015) step 005: RMS=0.112 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.071 (target=0.015) step 020: RMS=0.059 (target=0.015) step 025: RMS=0.049 (target=0.015) step 030: RMS=0.040 (target=0.015) step 035: RMS=0.034 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.025 (target=0.015) step 050: RMS=0.022 (target=0.015) step 055: RMS=0.020 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.3 minutes mris_inflate utimesec 18.485953 mris_inflate stimesec 0.699771 mris_inflate ru_maxrss 258684 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 667273 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 112 mris_inflate ru_oublock 13240 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 3 mris_inflate ru_nivcsw 69 @#@FSTIME 2025:02:18:10:40:05 mris_inflate N 2 e 19.25 S 0.71 U 18.48 P 99% M 258684 F 0 R 667278 W 0 c 69 w 4 I 112 O 13240 L 1.30 1.11 0.82 @#@FSLOADPOST 2025:02:18:10:40:24 mris_inflate N 2 1.22 1.10 0.82 #-------------------------------------------- #@# Curv .H and .K lh Tue Feb 18 10:40:24 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 21.099*4pi (265.136) --> -20 handles ICI = 192.8, FI = 1837.8, variation=29290.883 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...mris_curvature done. @#@FSTIME 2025:02:18:10:40:24 mris_curvature N 4 e 1.42 S 0.06 U 1.30 P 96% M 185396 F 9 R 50896 W 0 c 7 w 11 I 1416 O 2560 L 1.22 1.10 0.82 @#@FSLOADPOST 2025:02:18:10:40:25 mris_curvature N 4 1.22 1.10 0.82 rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 247 vertices thresholded to be in k1 ~ [-0.35 0.29], k2 ~ [-0.11 0.05] total integrated curvature = 0.442*4pi (5.549) --> 1 handles ICI = 1.7, FI = 14.5, variation=232.590 163 vertices thresholded to be in [-0.01 0.03] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 165 vertices thresholded to be in [-0.19 0.15] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.016, std = 0.026 mris_curvature done. @#@FSTIME 2025:02:18:10:40:25 mris_curvature N 12 e 38.89 S 0.17 U 38.70 P 99% M 439992 F 0 R 114738 W 0 c 212 w 5 I 224 O 2560 L 1.22 1.10 0.82 @#@FSLOADPOST 2025:02:18:10:41:04 mris_curvature N 12 1.18 1.10 0.83 #-------------------------------------------- #@# Curv .H and .K rh Tue Feb 18 10:41:04 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 26.113*4pi (328.141) --> -25 handles ICI = 199.0, FI = 1801.7, variation=28986.545 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...mris_curvature done. @#@FSTIME 2025:02:18:10:41:04 mris_curvature N 4 e 1.42 S 0.12 U 1.28 P 99% M 192140 F 0 R 52852 W 0 c 99 w 5 I 224 O 2656 L 1.18 1.10 0.83 @#@FSLOADPOST 2025:02:18:10:41:06 mris_curvature N 4 1.18 1.10 0.83 rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 303 vertices thresholded to be in k1 ~ [-0.26 0.46], k2 ~ [-0.10 0.06] total integrated curvature = 0.524*4pi (6.580) --> 0 handles ICI = 1.8, FI = 14.7, variation=236.763 172 vertices thresholded to be in [-0.01 0.02] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 168 vertices thresholded to be in [-0.14 0.23] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.015, std = 0.027 mris_curvature done. @#@FSTIME 2025:02:18:10:41:06 mris_curvature N 12 e 39.88 S 0.21 U 39.65 P 99% M 456680 F 0 R 119119 W 0 c 183 w 5 I 224 O 2656 L 1.18 1.10 0.83 @#@FSLOADPOST 2025:02:18:10:41:46 mris_curvature N 12 1.14 1.10 0.85 #-------------------------------------------- #@# Sphere lh Tue Feb 18 10:41:46 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 version: 7.4.1 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.262... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.33 pass 1: epoch 2 of 3 starting distance error %20.30 unfolding complete - removing small folds... starting distance error %20.29 removing remaining folds... final distance error %20.33 MRISunfold() return, current seed 1234 -01: dt=0.0000, 9 negative triangles VmPeak 590076 158: dt=0.9900, 9 negative triangles 159: dt=0.9900, 6 negative triangles 160: dt=0.9900, 6 negative triangles 161: dt=0.9900, 6 negative triangles 162: dt=0.9900, 6 negative triangles 163: dt=0.9900, 4 negative triangles 164: dt=0.9900, 6 negative triangles 165: dt=0.9900, 4 negative triangles 166: dt=0.9900, 4 negative triangles 167: dt=0.9900, 1 negative triangles 168: dt=0.9900, 3 negative triangles 169: dt=0.9900, 1 negative triangles 170: dt=0.9900, 2 negative triangles 171: dt=0.9900, 1 negative triangles 172: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.1323 hours FSRUNTIME@ mris_sphere 0.1323 hours 1 threads #VMPC# mris_sphere VmPeak 590076 mris_sphere done @#@FSTIME 2025:02:18:10:41:46 mris_sphere N 4 e 476.20 S 16.71 U 459.38 P 99% M 333768 F 11 R 14264496 W 0 c 2778 w 10 I 1584 O 11472 L 1.14 1.10 0.85 @#@FSLOADPOST 2025:02:18:10:49:42 mris_sphere N 4 1.26 1.17 1.00 #-------------------------------------------- #@# Sphere rh Tue Feb 18 10:49:42 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 version: 7.4.1 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.265... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.88 pass 1: epoch 2 of 3 starting distance error %19.89 unfolding complete - removing small folds... starting distance error %19.86 removing remaining folds... final distance error %19.90 MRISunfold() return, current seed 1234 -01: dt=0.0000, 10 negative triangles VmPeak 602564 181: dt=0.9900, 10 negative triangles 182: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.1523 hours FSRUNTIME@ mris_sphere 0.1523 hours 1 threads #VMPC# mris_sphere VmPeak 602564 mris_sphere done @#@FSTIME 2025:02:18:10:49:42 mris_sphere N 4 e 548.20 S 19.40 U 528.69 P 99% M 346220 F 0 R 16567217 W 0 c 3330 w 2 I 0 O 11912 L 1.26 1.17 1.00 @#@FSLOADPOST 2025:02:18:10:58:50 mris_sphere N 4 1.11 1.10 1.02 #-------------------------------------------- #@# Surf Reg lh Tue Feb 18 10:58:50 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_register -curv ../surf/lh.sphere /home/tonglab/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts cmdline mris_register -curv ../surf/lh.sphere /home/tonglab/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.4.1 7.4.1 reading surface from ../surf/lh.sphere... reading template parameterization from /home/tonglab/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.586 curvature mean = 0.044, std = 0.817 curvature mean = 0.024, std = 0.848 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (6.50, -11.00, -6.00) sse = 260997.3, elapsed since starting=0.3556 min MRISrigidBodyAlignGlobal() done 0.36 min curvature mean = 0.001, std = 0.827 curvature mean = 0.010, std = 0.940 curvature mean = -0.006, std = 0.837 curvature mean = 0.005, std = 0.975 curvature mean = -0.009, std = 0.838 curvature mean = 0.002, std = 0.990 2 Reading smoothwm curvature mean = -0.023, std = 0.279 curvature mean = 0.036, std = 0.247 curvature mean = 0.075, std = 0.333 curvature mean = 0.030, std = 0.304 curvature mean = 0.036, std = 0.525 curvature mean = 0.029, std = 0.331 curvature mean = 0.020, std = 0.669 curvature mean = 0.029, std = 0.342 curvature mean = 0.005, std = 0.781 MRISregister() return, current seed 0 -01: dt=0.0000, 4 negative triangles VmPeak 560964 115: dt=0.9900, 4 negative triangles expanding nbhd size to 1 116: dt=0.9900, 6 negative triangles 117: dt=0.9900, 5 negative triangles 118: dt=0.9900, 3 negative triangles 119: dt=0.9900, 3 negative triangles 120: dt=0.9900, 3 negative triangles 121: dt=0.9900, 3 negative triangles 122: dt=0.9900, 3 negative triangles 123: dt=0.9900, 3 negative triangles 124: dt=0.9900, 3 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.11 hours #VMPC# mris_register VmPeak 560964 FSRUNTIME@ mris_register 0.1146 hours 1 threads @#@FSTIME 2025:02:18:10:58:50 mris_register N 4 e 412.45 S 10.56 U 401.81 P 99% M 305032 F 17 R 9111140 W 0 c 2024 w 23 I 7832 O 11472 L 1.11 1.10 1.02 @#@FSLOADPOST 2025:02:18:11:05:43 mris_register N 4 1.10 1.15 1.07 ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Tue Feb 18 11:05:43 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_register -curv ../surf/rh.sphere /home/tonglab/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts cmdline mris_register -curv ../surf/rh.sphere /home/tonglab/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.4.1 7.4.1 reading surface from ../surf/rh.sphere... reading template parameterization from /home/tonglab/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host= leia, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = 0.000, std = 5.656 curvature mean = 0.032, std = 0.811 curvature mean = 0.022, std = 0.841 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (9.00, -5.50, -2.00) sse = 278640.6, elapsed since starting=0.3912 min MRISrigidBodyAlignGlobal() done 0.39 min curvature mean = -0.006, std = 0.818 curvature mean = 0.009, std = 0.938 curvature mean = -0.013, std = 0.825 curvature mean = 0.004, std = 0.974 curvature mean = -0.015, std = 0.826 curvature mean = 0.001, std = 0.989 2 Reading smoothwm curvature mean = -0.021, std = 0.271 curvature mean = 0.031, std = 0.239 curvature mean = 0.068, std = 0.339 curvature mean = 0.028, std = 0.295 curvature mean = 0.033, std = 0.538 curvature mean = 0.027, std = 0.321 curvature mean = 0.017, std = 0.686 curvature mean = 0.027, std = 0.333 curvature mean = 0.005, std = 0.797 MRISregister() return, current seed 0 -01: dt=0.0000, 3 negative triangles VmPeak 570268 116: dt=0.9900, 3 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.13 hours #VMPC# mris_register VmPeak 570268 FSRUNTIME@ mris_register 0.1268 hours 1 threads @#@FSTIME 2025:02:18:11:05:43 mris_register N 4 e 456.37 S 11.85 U 444.46 P 99% M 314372 F 0 R 9950956 W 0 c 2298 w 12 I 5584 O 11912 L 1.10 1.15 1.07 @#@FSLOADPOST 2025:02:18:11:13:19 mris_register N 4 1.23 1.19 1.11 ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Tue Feb 18 11:13:19 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white @#@FSTIME 2025:02:18:11:13:19 mris_jacobian N 3 e 0.93 S 0.08 U 0.81 P 96% M 248576 F 5 R 75371 W 0 c 3 w 8 I 984 O 1280 L 1.23 1.19 1.11 @#@FSLOADPOST 2025:02:18:11:13:20 mris_jacobian N 3 1.21 1.19 1.11 #-------------------------------------------- #@# Jacobian white rh Tue Feb 18 11:13:20 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white @#@FSTIME 2025:02:18:11:13:20 mris_jacobian N 3 e 0.95 S 0.10 U 0.83 P 98% M 257784 F 0 R 78243 W 0 c 5 w 3 I 112 O 1328 L 1.21 1.19 1.11 @#@FSLOADPOST 2025:02:18:11:13:21 mris_jacobian N 3 1.21 1.19 1.11 #-------------------------------------------- #@# AvgCurv lh Tue Feb 18 11:13:21 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mrisp_paint -a 5 /home/tonglab/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /home/tonglab/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... @#@FSTIME 2025:02:18:11:13:21 mrisp_paint N 5 e 0.80 S 0.06 U 0.69 P 94% M 190064 F 8 R 52175 W 0 c 3 w 10 I 1464 O 1280 L 1.21 1.19 1.11 @#@FSLOADPOST 2025:02:18:11:13:22 mrisp_paint N 5 1.21 1.19 1.11 #-------------------------------------------- #@# AvgCurv rh Tue Feb 18 11:13:22 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mrisp_paint -a 5 /home/tonglab/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /home/tonglab/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... @#@FSTIME 2025:02:18:11:13:22 mrisp_paint N 5 e 0.77 S 0.07 U 0.68 P 98% M 197016 F 0 R 54112 W 0 c 5 w 3 I 112 O 1328 L 1.21 1.19 1.11 @#@FSLOADPOST 2025:02:18:11:13:23 mrisp_paint N 5 1.21 1.19 1.11 #----------------------------------------- #@# Cortical Parc lh Tue Feb 18 11:13:23 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 lh ../surf/lh.sphere.reg /home/tonglab/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 2494 labels changed using aseg relabeling using gibbs priors... 000: 3654 changed, 163004 examined... 001: 853 changed, 15226 examined... 002: 213 changed, 4765 examined... 003: 80 changed, 1260 examined... 004: 34 changed, 470 examined... 005: 14 changed, 196 examined... 006: 5 changed, 96 examined... 007: 2 changed, 27 examined... 008: 2 changed, 12 examined... 009: 3 changed, 14 examined... 010: 1 changed, 13 examined... 011: 2 changed, 7 examined... 012: 2 changed, 12 examined... 013: 0 changed, 12 examined... 268 labels changed using aseg 000: 141 total segments, 98 labels (456 vertices) changed 001: 41 total segments, 4 labels (23 vertices) changed 002: 37 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 11 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 2635 vertices marked for relabeling... 2635 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 9 seconds. @#@FSTIME 2025:02:18:11:13:23 mris_ca_label N 11 e 8.57 S 0.51 U 8.03 P 99% M 1512516 F 9 R 513196 W 0 c 41 w 10 I 64152 O 2552 L 1.21 1.19 1.11 @#@FSLOADPOST 2025:02:18:11:13:31 mris_ca_label N 11 1.18 1.18 1.11 #----------------------------------------- #@# Cortical Parc rh Tue Feb 18 11:13:31 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 rh ../surf/rh.sphere.reg /home/tonglab/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1710 labels changed using aseg relabeling using gibbs priors... 000: 3331 changed, 169259 examined... 001: 735 changed, 13964 examined... 002: 197 changed, 4145 examined... 003: 76 changed, 1156 examined... 004: 36 changed, 462 examined... 005: 13 changed, 224 examined... 006: 7 changed, 88 examined... 007: 3 changed, 37 examined... 008: 1 changed, 18 examined... 009: 1 changed, 7 examined... 010: 0 changed, 6 examined... 197 labels changed using aseg 000: 89 total segments, 51 labels (187 vertices) changed 001: 40 total segments, 2 labels (5 vertices) changed 002: 39 total segments, 1 labels (1 vertices) changed 003: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 6 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1682 vertices marked for relabeling... 1682 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 9 seconds. @#@FSTIME 2025:02:18:11:13:31 mris_ca_label N 11 e 8.76 S 0.57 U 8.16 P 99% M 1239396 F 0 R 514622 W 0 c 56 w 3 I 36352 O 2648 L 1.18 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:13:40 mris_ca_label N 11 1.15 1.17 1.11 #-------------------------------------------- #@# WhiteSurfs lh Tue Feb 18 11:13:40 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 326004 0.33242 0.12746 0.000636 2.6603 Corner 978012 60.00000 16.31890 0.226211 179.3039 Edge 489006 0.89058 0.21215 0.019549 3.9188 Hinge 489006 11.73825 14.04434 0.000044 179.9597 Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label MRISripNotLabel() ripped 8560/163004 vertices (154444 unripped) Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 ripped 591 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 81502: xyz = (-52.7228,-8.45374,5.42838) oxyz = (-52.7228,-8.45374,5.42838) wxzy = (-52.7228,-8.45374,5.42838) pxyz = (0,0,0) CBVO Creating mask 163004 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=2 had to be increased for 530 vertices, nripped=9151 mean border=79.2, 766 (766) missing vertices, mean dist 0.3 [1.4 (%15.7)->0.6 (%84.3))] %36 local maxima, %58 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1681 min Finding expansion regions mean absolute distance = 0.75 +- 1.07 4072 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=3117225.8, rms=9.608 001: dt: 0.5000, sse=1594843.2, rms=6.526 (32.081%) 002: dt: 0.5000, sse=1126539.6, rms=5.284 (19.033%) 003: dt: 0.5000, sse=1024088.8, rms=4.918 (6.916%) 004: dt: 0.5000, sse=921467.0, rms=4.644 (5.571%) rms = 4.6595/4.6442, sse=930699.4/921467.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=677018.2, rms=3.689 (20.574%) 006: dt: 0.2500, sse=593345.8, rms=3.267 (11.422%) 007: dt: 0.2500, sse=550654.3, rms=3.100 (5.125%) 008: dt: 0.2500, sse=542094.6, rms=3.035 (2.102%) rms = 2.9904/3.0347, sse=532386.8/542094.6, time step reduction 2 of 3 to 0.125 0 0 1 009: dt: 0.2500, sse=532386.8, rms=2.990 (1.461%) 010: dt: 0.1250, sse=511758.6, rms=2.872 (3.961%) rms = 2.8414/2.8720, sse=508878.6/511758.6, time step reduction 3 of 3 to 0.062 0 0 1 011: dt: 0.1250, sse=508878.6, rms=2.841 (1.065%) maximum number of reductions reached, breaking from loop positioning took 1.0 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=1 had to be increased for 595 vertices, nripped=9151 mean border=82.0, 713 (568) missing vertices, mean dist -0.3 [0.6 (%61.6)->0.2 (%38.4))] %48 local maxima, %46 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1177 min Finding expansion regions mean absolute distance = 0.46 +- 0.88 5698 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1221649.4, rms=5.551 012: dt: 0.5000, sse=988043.5, rms=4.772 (14.033%) rms = 4.9296/4.7723, sse=1037795.7/988043.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 013: dt: 0.2500, sse=808240.3, rms=4.128 (13.508%) 014: dt: 0.2500, sse=727904.6, rms=3.735 (9.514%) 015: dt: 0.2500, sse=671228.7, rms=3.558 (4.729%) 016: dt: 0.2500, sse=662353.7, rms=3.460 (2.767%) 017: dt: 0.2500, sse=640637.6, rms=3.400 (1.735%) rms = 3.3636/3.3999, sse=645262.6/640637.6, time step reduction 2 of 3 to 0.125 0 1 1 018: dt: 0.2500, sse=645262.6, rms=3.364 (1.066%) 019: dt: 0.1250, sse=641517.8, rms=3.262 (3.017%) rms = 3.2486/3.2622, sse=628699.4/641517.8, time step reduction 3 of 3 to 0.062 0 0 1 020: dt: 0.1250, sse=628699.4, rms=3.249 (0.416%) maximum number of reductions reached, breaking from loop positioning took 0.8 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 722 vertices, nripped=9151 mean border=85.2, 741 (505) missing vertices, mean dist -0.3 [0.5 (%68.9)->0.2 (%31.1))] %66 local maxima, %28 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0650 min Finding expansion regions mean absolute distance = 0.40 +- 0.62 5951 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1294217.4, rms=5.697 021: dt: 0.5000, sse=1054474.4, rms=4.839 (15.059%) rms = 4.9811/4.8391, sse=1083303.7/1054474.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=838654.4, rms=4.120 (14.859%) 023: dt: 0.2500, sse=762609.9, rms=3.745 (9.105%) 024: dt: 0.2500, sse=726394.6, rms=3.620 (3.327%) rms = 3.5796/3.6203, sse=746835.5/726394.6, time step reduction 2 of 3 to 0.125 0 1 1 025: dt: 0.2500, sse=746835.5, rms=3.580 (1.124%) 026: dt: 0.1250, sse=700264.4, rms=3.469 (3.092%) rms = 3.4479/3.4689, sse=690925.8/700264.4, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=690925.8, rms=3.448 (0.607%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 583 vertices, nripped=9151 mean border=86.5, 822 (474) missing vertices, mean dist -0.1 [0.4 (%58.7)->0.2 (%41.3))] %73 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0424 min Finding expansion regions mean absolute distance = 0.30 +- 0.49 5213 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=826971.8, rms=4.064 rms = 4.2882/4.0645, sse=923561.4/826971.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=735584.1, rms=3.700 (8.974%) 029: dt: 0.2500, sse=709274.4, rms=3.509 (5.146%) rms = 3.5118/3.5093, sse=698387.5/709274.5, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 3.4961/3.5093, sse=699965.8/709274.5, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=699965.8, rms=3.496 (0.378%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes done positioning surface Removing intersections #ET# mris_place_surface 3.14 minutes Writing output to ../surf/lh.white #VMPC# mris_place_surfaces VmPeak 2300084 mris_place_surface done @#@FSTIME 2025:02:18:11:13:40 mris_place_surface N 25 e 195.05 S 0.67 U 194.34 P 99% M 2043676 F 0 R 579610 W 0 c 932 w 2 I 0 O 11464 L 1.15 1.17 1.11 @#@FSLOADPOST 2025:02:18:11:16:55 mris_place_surface N 25 1.23 1.18 1.11 #-------------------------------------------- #@# WhiteSurfs rh Tue Feb 18 11:16:55 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 338514 0.32894 0.12151 0.000889 2.7992 Corner 1015542 60.00000 15.28522 0.211851 179.3788 Edge 507771 0.88388 0.20262 0.020496 3.2849 Hinge 507771 11.12731 12.57667 0.000008 179.9937 Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label MRISripNotLabel() ripped 8796/169259 vertices (160463 unripped) Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Ripping BG MRISripBasalGanglia(): 1 -2 2 0.5 ripped 448 Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 84630: xyz = (20.2167,-4.96544,52.9355) oxyz = (20.2167,-4.96544,52.9355) wxzy = (20.2167,-4.96544,52.9355) pxyz = (0,0,0) CBVO Creating mask 169259 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=2 had to be increased for 178 vertices, nripped=9244 mean border=78.4, 111 (111) missing vertices, mean dist 0.4 [1.3 (%13.4)->0.6 (%86.6))] %48 local maxima, %46 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1784 min Finding expansion regions mean absolute distance = 0.72 +- 0.96 3487 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=3190150.0, rms=9.568 001: dt: 0.5000, sse=1339598.1, rms=5.866 (38.694%) 002: dt: 0.5000, sse=830049.6, rms=4.296 (26.772%) 003: dt: 0.5000, sse=711949.2, rms=3.859 (10.174%) 004: dt: 0.5000, sse=638318.4, rms=3.542 (8.205%) rms = 3.5781/3.5419, sse=645626.9/638318.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=424967.2, rms=2.415 (31.828%) 006: dt: 0.2500, sse=344440.8, rms=1.819 (24.660%) 007: dt: 0.2500, sse=318320.6, rms=1.570 (13.677%) 008: dt: 0.2500, sse=308573.0, rms=1.476 (5.997%) 009: dt: 0.2500, sse=303989.1, rms=1.418 (3.918%) rms = 1.3859/1.4184, sse=300372.4/303989.1, time step reduction 2 of 3 to 0.125 0 0 1 010: dt: 0.2500, sse=300372.4, rms=1.386 (2.286%) 011: dt: 0.1250, sse=288753.8, rms=1.245 (10.197%) rms = 1.2163/1.2446, sse=286438.5/288753.9, time step reduction 3 of 3 to 0.062 0 0 1 012: dt: 0.1250, sse=286438.5, rms=1.216 (2.273%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes done positioning surface Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=1 had to be increased for 136 vertices, nripped=9244 mean border=81.5, 85 (21) missing vertices, mean dist -0.3 [0.6 (%65.4)->0.2 (%34.6))] %59 local maxima, %36 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1273 min Finding expansion regions mean absolute distance = 0.44 +- 0.79 5855 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1055154.4, rms=5.001 013: dt: 0.5000, sse=678074.9, rms=3.636 (27.287%) rms = 3.6686/3.6363, sse=686472.9/678074.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 014: dt: 0.2500, sse=509510.2, rms=2.816 (22.554%) 015: dt: 0.2500, sse=401480.5, rms=2.130 (24.357%) 016: dt: 0.2500, sse=353987.2, rms=1.738 (18.411%) 017: dt: 0.2500, sse=331069.5, rms=1.509 (13.198%) 018: dt: 0.2500, sse=319001.0, rms=1.365 (9.537%) 019: dt: 0.2500, sse=312221.8, rms=1.273 (6.729%) rms = 1.2376/1.2729, sse=310413.6/312221.8, time step reduction 2 of 3 to 0.125 0 0 1 020: dt: 0.2500, sse=310413.6, rms=1.238 (2.778%) 021: dt: 0.1250, sse=297851.5, rms=1.066 (13.835%) rms = 1.0402/1.0664, sse=296743.1/297851.5, time step reduction 3 of 3 to 0.062 0 0 1 022: dt: 0.1250, sse=296743.1, rms=1.040 (2.449%) maximum number of reductions reached, breaking from loop positioning took 0.9 minutes done positioning surface Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 241 vertices, nripped=9244 mean border=84.8, 103 (14) missing vertices, mean dist -0.2 [0.4 (%72.1)->0.2 (%27.9))] %76 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0716 min Finding expansion regions mean absolute distance = 0.37 +- 0.55 6035 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=921566.1, rms=4.565 023: dt: 0.5000, sse=635674.4, rms=3.375 (26.060%) rms = 3.4928/3.3751, sse=657803.4/635674.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 024: dt: 0.2500, sse=437304.3, rms=2.297 (31.955%) 025: dt: 0.2500, sse=361272.6, rms=1.592 (30.665%) 026: dt: 0.2500, sse=325130.4, rms=1.322 (16.949%) 027: dt: 0.2500, sse=317817.3, rms=1.230 (7.019%) rms = 1.2154/1.2296, sse=316390.3/317817.3, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=316390.3, rms=1.215 (1.158%) 029: dt: 0.1250, sse=300645.5, rms=0.998 (17.927%) rms = 0.9653/0.9975, sse=297835.2/300645.5, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=297835.2, rms=0.965 (3.226%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 112.0555340; border_low = 64.0000000; outside_low = 50.7469370; outside_hi = 112.0555340; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 288 vertices, nripped=9244 mean border=86.1, 138 (11) missing vertices, mean dist -0.1 [0.3 (%60.4)->0.2 (%39.6))] %82 local maxima, %12 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0461 min Finding expansion regions mean absolute distance = 0.27 +- 0.43 5951 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=408245.1, rms=2.132 rms = 2.3466/2.1320, sse=473583.7/408245.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=330261.8, rms=1.412 (33.784%) 032: dt: 0.2500, sse=299321.8, rms=0.863 (38.869%) rms = 0.8562/0.8630, sse=298929.1/299321.8, time step reduction 2 of 3 to 0.125 0 0 1 033: dt: 0.2500, sse=298929.1, rms=0.856 (0.789%) 034: dt: 0.1250, sse=293149.3, rms=0.761 (11.094%) rms = 0.7377/0.7612, sse=291231.1/293149.3, time step reduction 3 of 3 to 0.062 0 0 1 035: dt: 0.1250, sse=291231.1, rms=0.738 (3.079%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Removing intersections #ET# mris_place_surface 3.61 minutes Writing output to ../surf/rh.white #VMPC# mris_place_surfaces VmPeak 2426576 mris_place_surface done @#@FSTIME 2025:02:18:11:16:55 mris_place_surface N 25 e 223.67 S 0.71 U 222.92 P 99% M 2170224 F 0 R 611723 W 0 c 1276 w 2 I 0 O 11904 L 1.23 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:20:39 mris_place_surface N 25 1.06 1.12 1.09 #-------------------------------------------- #@# T1PialSurf lh Tue Feb 18 11:20:39 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white Reading in input surface ../surf/lh.white Not smoothing input surface Area 326004 0.33469 0.14037 0.000127 3.2914 Corner 978012 60.00000 17.71188 0.108884 178.9577 Edge 489006 0.89543 0.23052 0.012180 3.9188 Hinge 489006 11.87005 14.23842 0.000036 179.9453 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 59.0926 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label MRISripNotLabel() ripped 6829/163004 vertices (156175 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 81502: xyz = (-52.7192,-8.46174,5.45238) oxyz = (-52.7192,-8.46174,5.45238) wxzy = (-52.7192,-8.46174,5.45238) pxyz = (-52.7192,-8.46174,5.45238) CBVO Creating mask 163004 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=2 had to be increased for 568 vertices, nripped=6829 mean border=47.5, 538 (538) missing vertices, mean dist 1.6 [5.9 (%0.2)->2.1 (%99.8))] %11 local maxima, %62 large gradients and %23 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1294 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=49652180.0, rms=39.844 001: dt: 0.5000, sse=35760872.0, rms=33.783 (15.212%) 002: dt: 0.5000, sse=25372158.0, rms=28.417 (15.884%) 003: dt: 0.5000, sse=18451106.0, rms=24.189 (14.877%) 004: dt: 0.5000, sse=13939464.0, rms=20.979 (13.273%) 005: dt: 0.5000, sse=10829990.0, rms=18.444 (12.084%) 006: dt: 0.5000, sse=8230237.0, rms=16.018 (13.151%) 007: dt: 0.5000, sse=6017838.5, rms=13.618 (14.985%) 008: dt: 0.5000, sse=4218136.0, rms=11.294 (17.068%) 009: dt: 0.5000, sse=2958117.5, rms=9.328 (17.406%) 010: dt: 0.5000, sse=2137734.0, rms=7.784 (16.554%) 011: dt: 0.5000, sse=1740031.9, rms=6.911 (11.210%) 012: dt: 0.5000, sse=1546450.6, rms=6.441 (6.799%) 013: dt: 0.5000, sse=1484119.6, rms=6.281 (2.488%) 014: dt: 0.5000, sse=1431143.8, rms=6.140 (2.250%) rms = 6.1145/6.1396, sse=1422478.6/1431143.7, time step reduction 1 of 3 to 0.250 0 0 1 015: dt: 0.5000, sse=1422478.6, rms=6.115 (0.408%) 016: dt: 0.2500, sse=978338.1, rms=4.788 (21.694%) 017: dt: 0.2500, sse=901387.1, rms=4.521 (5.583%) rms = 4.5815/4.5208, sse=919259.0/901387.1, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 018: dt: 0.1250, sse=829555.4, rms=4.256 (5.866%) 019: dt: 0.1250, sse=735179.2, rms=3.879 (8.856%) 020: dt: 0.1250, sse=711578.8, rms=3.778 (2.584%) rms = 3.7564/3.7785, sse=706576.1/711578.8, time step reduction 3 of 3 to 0.062 0 0 1 021: dt: 0.1250, sse=706576.1, rms=3.756 (0.585%) maximum number of reductions reached, breaking from loop positioning took 1.6 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=1 had to be increased for 4952 vertices, nripped=6829 mean border=45.4, 1386 (202) missing vertices, mean dist 0.1 [0.1 (%59.7)->0.6 (%40.3))] %22 local maxima, %49 large gradients and %23 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0498 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1144185.9, rms=5.169 rms = 5.8201/5.1692, sse=1367500.7/1144185.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=936239.6, rms=4.476 (13.412%) 023: dt: 0.2500, sse=895942.2, rms=4.328 (3.300%) rms = 4.4022/4.3282, sse=915782.3/895942.3, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 024: dt: 0.1250, sse=857045.1, rms=4.181 (3.410%) 025: dt: 0.1250, sse=802761.4, rms=3.966 (5.144%) 026: dt: 0.1250, sse=777306.4, rms=3.861 (2.646%) rms = 3.8131/3.8606, sse=766052.1/777306.4, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=766052.1, rms=3.813 (1.230%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 5544 vertices, nripped=6829 mean border=43.3, 1723 (161) missing vertices, mean dist 0.2 [0.2 (%48.6)->0.6 (%51.4))] %40 local maxima, %31 large gradients and %24 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0285 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1187334.6, rms=5.283 rms = 5.9414/5.2829, sse=1418345.7/1187334.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=1003827.9, rms=4.691 (11.204%) 029: dt: 0.2500, sse=907410.9, rms=4.348 (7.317%) rms = 4.4021/4.3478, sse=921708.1/907410.9, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 030: dt: 0.1250, sse=869490.1, rms=4.205 (3.291%) 031: dt: 0.1250, sse=814441.9, rms=3.988 (5.147%) 032: dt: 0.1250, sse=784798.4, rms=3.867 (3.039%) 033: dt: 0.1250, sse=767705.3, rms=3.796 (1.849%) 034: dt: 0.1250, sse=755105.0, rms=3.742 (1.411%) rms = 3.6997/3.7421, sse=745253.4/755105.0, time step reduction 3 of 3 to 0.062 0 0 1 035: dt: 0.1250, sse=745253.4, rms=3.700 (1.131%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=163004 Gdiag_no=-1 vno start=0, stop=163004 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 4763 vertices, nripped=6829 mean border=41.7, 3090 (150) missing vertices, mean dist 0.1 [0.2 (%48.4)->0.4 (%51.6))] %47 local maxima, %23 large gradients and %23 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0186 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=907320.1, rms=4.335 rms = 5.4142/4.3350, sse=1235580.1/907320.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 036: dt: 0.2500, sse=802256.2, rms=3.925 (9.463%) 037: dt: 0.2500, sse=776420.9, rms=3.819 (2.703%) rms = 4.0298/3.8186, sse=827482.0/776420.9, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 038: dt: 0.1250, sse=750230.4, rms=3.706 (2.945%) 039: dt: 0.1250, sse=720986.9, rms=3.577 (3.484%) 040: dt: 0.1250, sse=707105.4, rms=3.515 (1.739%) rms = 3.4845/3.5149, sse=700292.7/707105.4, time step reduction 3 of 3 to 0.062 0 0 1 041: dt: 0.1250, sse=700292.7, rms=3.485 (0.863%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 6 intersecting terminating search with 0 intersecting #ET# mris_place_surface 3.60 minutes Writing output to ../surf/lh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1501372 mris_place_surface done @#@FSTIME 2025:02:18:11:20:39 mris_place_surface N 28 e 222.35 S 0.40 U 221.92 P 99% M 1244940 F 0 R 335519 W 0 c 1079 w 1 I 0 O 11464 L 1.06 1.12 1.09 @#@FSLOADPOST 2025:02:18:11:24:21 mris_place_surface N 28 1.21 1.15 1.10 #-------------------------------------------- #@# T1PialSurf rh Tue Feb 18 11:24:21 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white 7.4.1 7.4.1 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white Reading in input surface ../surf/rh.white Not smoothing input surface Area 338514 0.33065 0.13489 0.000245 2.7992 Corner 1015542 60.00000 16.71452 0.043133 179.3726 Edge 507771 0.88766 0.22133 0.013732 4.2500 Hinge 507771 11.30008 12.96749 0.000012 179.9663 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot [DEBUG] CTABreadFromBinaryV2(): ct->nentries=36, num_entries_to_read=36 Reading in input volume brain.finalsurfs.mgz Reading in seg volume aseg.presurf.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=33956, wmmin=5, clip=110 MRIfindBrightNonWM(): 1434 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 59.0926 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label MRISripNotLabel() ripped 6737/169259 vertices (162522 unripped) INFO: rip surface needed but not specified, so using input surface Ripping segs (eg, WMSA, BG, frozen) Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 84630: xyz = (20.2683,-4.95191,52.9768) oxyz = (20.2683,-4.95191,52.9768) wxzy = (20.2683,-4.95191,52.9768) pxyz = (20.2683,-4.95191,52.9768) CBVO Creating mask 169259 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=2 had to be increased for 229 vertices, nripped=6737 mean border=48.0, 146 (146) missing vertices, mean dist 1.6 [0.3 (%0.0)->2.3 (%100.0))] %10 local maxima, %55 large gradients and %31 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1375 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host= leia, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=50334260.0, rms=39.275 001: dt: 0.5000, sse=36768104.0, rms=33.538 (14.607%) 002: dt: 0.5000, sse=26708398.0, rms=28.548 (14.878%) 003: dt: 0.5000, sse=19767286.0, rms=24.519 (14.112%) 004: dt: 0.5000, sse=14988343.0, rms=21.306 (13.104%) 005: dt: 0.5000, sse=11597008.0, rms=18.694 (12.261%) 006: dt: 0.5000, sse=8853539.0, rms=16.276 (12.934%) 007: dt: 0.5000, sse=6595342.5, rms=13.975 (14.138%) 008: dt: 0.5000, sse=4771059.5, rms=11.792 (15.623%) 009: dt: 0.5000, sse=3356538.5, rms=9.768 (17.161%) 010: dt: 0.5000, sse=2389895.5, rms=8.098 (17.098%) 011: dt: 0.5000, sse=1863133.2, rms=7.022 (13.288%) 012: dt: 0.5000, sse=1616868.9, rms=6.455 (8.073%) 013: dt: 0.5000, sse=1504059.2, rms=6.176 (4.315%) 014: dt: 0.5000, sse=1457536.1, rms=6.055 (1.964%) 015: dt: 0.5000, sse=1427862.1, rms=5.976 (1.304%) rms = 5.9285/5.9761, sse=1410869.2/1427862.1, time step reduction 1 of 3 to 0.250 0 0 1 016: dt: 0.5000, sse=1410869.2, rms=5.928 (0.798%) 017: dt: 0.2500, sse=979121.1, rms=4.655 (21.479%) 018: dt: 0.2500, sse=906808.4, rms=4.408 (5.314%) rms = 4.4751/4.4077, sse=926903.1/906808.4, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 019: dt: 0.1250, sse=834951.2, rms=4.147 (5.922%) 020: dt: 0.1250, sse=740000.7, rms=3.773 (9.009%) 021: dt: 0.1250, sse=718071.0, rms=3.681 (2.436%) rms = 3.6572/3.6812, sse=712532.7/718071.0, time step reduction 3 of 3 to 0.062 0 0 1 022: dt: 0.1250, sse=712532.8, rms=3.657 (0.652%) maximum number of reductions reached, breaking from loop positioning took 1.8 minutes done positioning surface Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=1 had to be increased for 7184 vertices, nripped=6737 mean border=46.0, 2107 (27) missing vertices, mean dist 0.1 [0.1 (%60.5)->0.6 (%39.5))] %20 local maxima, %44 large gradients and %31 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0450 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host= leia, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1122141.8, rms=4.967 rms = 5.6520/4.9670, sse=1358511.5/1122141.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 023: dt: 0.2500, sse=913779.3, rms=4.271 (14.020%) 024: dt: 0.2500, sse=880507.1, rms=4.148 (2.877%) rms = 4.2201/4.1478, sse=899767.6/880507.1, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 025: dt: 0.1250, sse=842741.8, rms=4.004 (3.462%) 026: dt: 0.1250, sse=790405.1, rms=3.796 (5.192%) 027: dt: 0.1250, sse=769285.2, rms=3.709 (2.294%) rms = 3.6817/3.7092, sse=762751.7/769285.2, time step reduction 3 of 3 to 0.062 0 0 1 028: dt: 0.1250, sse=762751.7, rms=3.682 (0.742%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 7822 vertices, nripped=6737 mean border=44.5, 2419 (18) missing vertices, mean dist 0.1 [0.1 (%49.3)->0.5 (%50.7))] %37 local maxima, %27 large gradients and %31 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0266 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host= leia, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1012141.6, rms=4.597 rms = 5.6922/4.5966, sse=1378073.2/1012141.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 029: dt: 0.2500, sse=878554.3, rms=4.123 (10.305%) 030: dt: 0.2500, sse=847567.8, rms=4.006 (2.844%) rms = 4.1461/4.0057, sse=884170.9/847567.8, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 031: dt: 0.1250, sse=817185.2, rms=3.886 (2.983%) 032: dt: 0.1250, sse=780544.2, rms=3.737 (3.832%) 033: dt: 0.1250, sse=762881.8, rms=3.664 (1.965%) rms = 3.6275/3.6638, sse=754231.3/762881.8, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=754231.2, rms=3.628 (0.991%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes done positioning surface Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 93.9444660; border_hi = 50.7469370; border_low = 24.2408140; outside_low = 10.0000000; outside_hi = 44.1204070; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0.5 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=169259 Gdiag_no=-1 vno start=0, stop=169259 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 6713 vertices, nripped=6737 mean border=43.2, 4258 (14) missing vertices, mean dist 0.1 [0.2 (%49.6)->0.3 (%50.4))] %43 local maxima, %20 large gradients and %30 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0175 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host= leia, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=865989.6, rms=4.067 rms = 5.2802/4.0674, sse=1233300.5/865989.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=786525.9, rms=3.753 (7.736%) rms = 3.7121/3.7527, sse=775946.2/786525.8, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=775946.2, rms=3.712 (1.084%) 037: dt: 0.1250, sse=731766.8, rms=3.523 (5.105%) 038: dt: 0.1250, sse=711059.2, rms=3.432 (2.568%) rms = 3.3990/3.4321, sse=703506.1/711059.2, time step reduction 3 of 3 to 0.062 0 0 1 039: dt: 0.1250, sse=703506.1, rms=3.399 (0.965%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes done positioning surface Pinning medial wall to white surface Removing intersections removing intersecting faces 000: 6 intersecting terminating search with 0 intersecting #ET# mris_place_surface 3.61 minutes Writing output to ../surf/rh.pial.T1 #VMPC# mris_place_surfaces VmPeak 1518324 mris_place_surface done @#@FSTIME 2025:02:18:11:24:21 mris_place_surface N 28 e 223.20 S 0.51 U 222.59 P 99% M 1261856 F 0 R 339979 W 0 c 3724 w 2 I 0 O 11904 L 1.21 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:04 mris_place_surface N 28 1.11 1.15 1.10 #@# white curv lh Tue Feb 18 11:28:04 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv @#@FSTIME 2025:02:18:11:28:04 mris_place_surface N 5 e 1.59 S 0.07 U 1.50 P 99% M 222812 F 1 R 60375 W 0 c 6 w 2 I 256 O 1280 L 1.11 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:06 mris_place_surface N 5 1.10 1.15 1.10 #@# white area lh Tue Feb 18 11:28:06 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area @#@FSTIME 2025:02:18:11:28:06 mris_place_surface N 3 e 0.75 S 0.06 U 0.66 P 97% M 222808 F 0 R 60375 W 0 c 6 w 3 I 112 O 1280 L 1.10 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:07 mris_place_surface N 3 1.10 1.15 1.10 #@# pial curv lh Tue Feb 18 11:28:07 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial @#@FSTIME 2025:02:18:11:28:07 mris_place_surface N 5 e 1.55 S 0.08 U 1.47 P 99% M 222940 F 0 R 60376 W 0 c 9 w 3 I 112 O 1280 L 1.10 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:08 mris_place_surface N 5 1.10 1.15 1.10 #@# pial area lh Tue Feb 18 11:28:08 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial @#@FSTIME 2025:02:18:11:28:08 mris_place_surface N 3 e 0.76 S 0.08 U 0.66 P 97% M 222936 F 0 R 60375 W 0 c 8 w 3 I 112 O 1280 L 1.10 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:09 mris_place_surface N 3 1.10 1.15 1.10 #@# thickness lh Tue Feb 18 11:28:09 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 163004 vertices processed 25000 of 163004 vertices processed 50000 of 163004 vertices processed 75000 of 163004 vertices processed 100000 of 163004 vertices processed 125000 of 163004 vertices processed 150000 of 163004 vertices processed 0 of 163004 vertices processed 25000 of 163004 vertices processed 50000 of 163004 vertices processed 75000 of 163004 vertices processed 100000 of 163004 vertices processed 125000 of 163004 vertices processed 150000 of 163004 vertices processed thickness calculation complete, 15:165 truncations. 90729 vertices at 0 distance 153554 vertices at 1 distance 59647 vertices at 2 distance 15680 vertices at 3 distance 4292 vertices at 4 distance 1268 vertices at 5 distance 421 vertices at 6 distance 173 vertices at 7 distance 85 vertices at 8 distance 38 vertices at 9 distance 23 vertices at 10 distance 18 vertices at 11 distance 12 vertices at 12 distance 15 vertices at 13 distance 20 vertices at 14 distance 6 vertices at 15 distance 8 vertices at 16 distance 11 vertices at 17 distance 4 vertices at 18 distance 2 vertices at 19 distance 2 vertices at 20 distance writing curvature file ../surf/lh.thickness @#@FSTIME 2025:02:18:11:28:09 mris_place_surface N 6 e 28.14 S 0.07 U 28.04 P 99% M 222904 F 0 R 68959 W 0 c 96 w 3 I 112 O 1280 L 1.10 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:37 mris_place_surface N 6 1.13 1.15 1.10 #@# area and vertex vol lh Tue Feb 18 11:28:37 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-M137 lh /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.volume masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Total face volume 249156 Total vertex volume 248930 (mask=0) #@# sub-M137 lh 248930 vertexvol Done @#@FSTIME 2025:02:18:11:28:37 vertexvol N 4 e 1.54 S 0.14 U 1.36 P 97% M 371060 F 13 R 105387 W 0 c 8 w 37 I 2136 O 3840 L 1.13 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:39 vertexvol N 4 1.13 1.15 1.10 #@# white curv rh Tue Feb 18 11:28:39 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv @#@FSTIME 2025:02:18:11:28:39 mris_place_surface N 5 e 1.61 S 0.07 U 1.53 P 99% M 231092 F 0 R 62669 W 0 c 8 w 1 I 0 O 1328 L 1.13 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:40 mris_place_surface N 5 1.12 1.15 1.10 #@# white area rh Tue Feb 18 11:28:40 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area @#@FSTIME 2025:02:18:11:28:40 mris_place_surface N 3 e 0.77 S 0.07 U 0.69 P 97% M 231220 F 0 R 62669 W 0 c 1 w 3 I 112 O 1328 L 1.12 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:41 mris_place_surface N 3 1.12 1.15 1.10 #@# pial curv rh Tue Feb 18 11:28:41 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial @#@FSTIME 2025:02:18:11:28:41 mris_place_surface N 5 e 1.63 S 0.06 U 1.56 P 99% M 230988 F 0 R 62669 W 0 c 6 w 3 I 112 O 1328 L 1.12 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:43 mris_place_surface N 5 1.12 1.15 1.10 #@# pial area rh Tue Feb 18 11:28:43 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial @#@FSTIME 2025:02:18:11:28:43 mris_place_surface N 3 e 0.78 S 0.05 U 0.71 P 98% M 231220 F 0 R 62671 W 0 c 6 w 3 I 112 O 1328 L 1.12 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:28:44 mris_place_surface N 3 1.12 1.15 1.10 #@# thickness rh Tue Feb 18 11:28:44 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 169259 vertices processed 25000 of 169259 vertices processed 50000 of 169259 vertices processed 75000 of 169259 vertices processed 100000 of 169259 vertices processed 125000 of 169259 vertices processed 150000 of 169259 vertices processed 0 of 169259 vertices processed 25000 of 169259 vertices processed 50000 of 169259 vertices processed 75000 of 169259 vertices processed 100000 of 169259 vertices processed 125000 of 169259 vertices processed 150000 of 169259 vertices processed thickness calculation complete, 39:356 truncations. 87100 vertices at 0 distance 155858 vertices at 1 distance 67230 vertices at 2 distance 19583 vertices at 3 distance 6014 vertices at 4 distance 1755 vertices at 5 distance 565 vertices at 6 distance 205 vertices at 7 distance 47 vertices at 8 distance 26 vertices at 9 distance 21 vertices at 10 distance 15 vertices at 11 distance 14 vertices at 12 distance 16 vertices at 13 distance 14 vertices at 14 distance 6 vertices at 15 distance 13 vertices at 16 distance 15 vertices at 17 distance 7 vertices at 18 distance 9 vertices at 19 distance 5 vertices at 20 distance writing curvature file ../surf/rh.thickness @#@FSTIME 2025:02:18:11:28:44 mris_place_surface N 6 e 30.03 S 0.08 U 29.93 P 99% M 231364 F 0 R 71577 W 0 c 96 w 3 I 112 O 1328 L 1.12 1.15 1.10 @#@FSLOADPOST 2025:02:18:11:29:14 mris_place_surface N 6 1.30 1.18 1.11 #@# area and vertex vol rh Tue Feb 18 11:29:14 CST 2025 cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-M137 rh /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.volume masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Total face volume 262538 Total vertex volume 262292 (mask=0) #@# sub-M137 rh 262292 vertexvol Done @#@FSTIME 2025:02:18:11:29:14 vertexvol N 4 e 1.57 S 0.13 U 1.42 P 98% M 385064 F 0 R 108504 W 0 c 4 w 26 I 224 O 3984 L 1.30 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:29:15 vertexvol N 4 1.28 1.18 1.11 #----------------------------------------- #@# Curvature Stats lh Tue Feb 18 11:29:15 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-M137 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-M137/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 278 ] Gb_filter = 0 WARN: S lookup min: -0.237810 WARN: S explicit min: 0.000000 vertex = 285 @#@FSTIME 2025:02:18:11:29:15 mris_curvature_stats N 11 e 2.31 S 0.07 U 2.14 P 95% M 222876 F 12 R 60566 W 0 c 16 w 26 I 2368 O 10280 L 1.28 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:29:18 mris_curvature_stats N 11 1.28 1.18 1.11 #----------------------------------------- #@# Curvature Stats rh Tue Feb 18 11:29:18 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-M137 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-M137/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 299 ] Gb_filter = 0 WARN: S lookup min: -0.003521 WARN: S explicit min: 0.000000 vertex = 97 @#@FSTIME 2025:02:18:11:29:18 mris_curvature_stats N 11 e 2.45 S 0.08 U 2.30 P 97% M 230864 F 0 R 62070 W 0 c 15 w 18 I 904 O 10664 L 1.28 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:29:20 mris_curvature_stats N 11 1.28 1.18 1.11 #-------------------------------------------- #@# Cortical ribbon mask Tue Feb 18 11:29:20 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-M137 SUBJECTS_DIR is /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer loading input data... Running hemis serially Processing left hemi computing distance to left white surface computing distance to left pial surface Processing right hemi computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 244 writing volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz mris_volmask took 7.68 minutes writing ribbon files @#@FSTIME 2025:02:18:11:29:20 mris_volmask N 12 e 460.70 S 0.61 U 460.02 P 99% M 1128432 F 7 R 564271 W 0 c 2341 w 6 I 920 O 984 L 1.28 1.18 1.11 @#@FSLOADPOST 2025:02:18:11:37:01 mris_volmask N 12 1.08 1.13 1.09 #----------------------------------------- #@# Cortical Parc 2 lh Tue Feb 18 11:37:01 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 lh ../surf/lh.sphere.reg /home/tonglab/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 39 labels changed using aseg relabeling using gibbs priors... 000: 10610 changed, 163004 examined... 001: 2477 changed, 41134 examined... 002: 759 changed, 13287 examined... 003: 311 changed, 4437 examined... 004: 164 changed, 1836 examined... 005: 93 changed, 945 examined... 006: 52 changed, 527 examined... 007: 26 changed, 284 examined... 008: 12 changed, 137 examined... 009: 5 changed, 59 examined... 010: 3 changed, 31 examined... 011: 3 changed, 18 examined... 012: 1 changed, 19 examined... 013: 0 changed, 7 examined... 3 labels changed using aseg 000: 261 total segments, 177 labels (2765 vertices) changed 001: 92 total segments, 8 labels (17 vertices) changed 002: 84 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 55 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1871 vertices marked for relabeling... 1871 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 11 seconds. @#@FSTIME 2025:02:18:11:37:01 mris_ca_label N 11 e 11.48 S 0.85 U 10.59 P 99% M 2218528 F 0 R 830188 W 0 c 43 w 3 I 42432 O 2560 L 1.08 1.13 1.09 @#@FSLOADPOST 2025:02:18:11:37:12 mris_ca_label N 11 1.07 1.12 1.09 #----------------------------------------- #@# Cortical Parc 2 rh Tue Feb 18 11:37:12 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 rh ../surf/rh.sphere.reg /home/tonglab/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 7 labels changed using aseg relabeling using gibbs priors... 000: 10872 changed, 169259 examined... 001: 2484 changed, 42273 examined... 002: 767 changed, 13252 examined... 003: 323 changed, 4321 examined... 004: 170 changed, 1843 examined... 005: 83 changed, 929 examined... 006: 48 changed, 488 examined... 007: 30 changed, 276 examined... 008: 16 changed, 169 examined... 009: 12 changed, 94 examined... 010: 5 changed, 62 examined... 011: 1 changed, 30 examined... 012: 0 changed, 6 examined... 3 labels changed using aseg 000: 263 total segments, 176 labels (3096 vertices) changed 001: 100 total segments, 13 labels (52 vertices) changed 002: 87 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 48 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... relabeling unknown label... 1193 vertices marked for relabeling... 1193 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 12 seconds. @#@FSTIME 2025:02:18:11:37:12 mris_ca_label N 11 e 11.91 S 0.93 U 10.97 P 99% M 2296064 F 0 R 877461 W 0 c 71 w 3 I 42776 O 2656 L 1.07 1.12 1.09 @#@FSLOADPOST 2025:02:18:11:37:24 mris_ca_label N 11 1.06 1.12 1.09 #----------------------------------------- #@# Cortical Parc 3 lh Tue Feb 18 11:37:24 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 lh ../surf/lh.sphere.reg /home/tonglab/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1860 labels changed using aseg relabeling using gibbs priors... 000: 2268 changed, 163004 examined... 001: 491 changed, 10654 examined... 002: 140 changed, 2844 examined... 003: 56 changed, 844 examined... 004: 23 changed, 345 examined... 005: 8 changed, 149 examined... 006: 2 changed, 45 examined... 007: 0 changed, 14 examined... 120 labels changed using aseg 000: 49 total segments, 16 labels (114 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1585 vertices marked for relabeling... 1585 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 9 seconds. @#@FSTIME 2025:02:18:11:37:24 mris_ca_label N 11 e 8.87 S 0.39 U 8.45 P 99% M 996952 F 0 R 372866 W 0 c 273 w 3 I 42976 O 2552 L 1.06 1.12 1.09 @#@FSLOADPOST 2025:02:18:11:37:33 mris_ca_label N 11 1.05 1.11 1.09 #----------------------------------------- #@# Cortical Parc 3 rh Tue Feb 18 11:37:33 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-M137 rh ../surf/rh.sphere.reg /home/tonglab/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.4.1 7.4.1 reading atlas from /home/tonglab/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized reading surface from /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.smoothwm... GCSA::load_default_data(): ninputs=1 sulc_only=0 which_norm=0 labeling surface... 1912 labels changed using aseg relabeling using gibbs priors... 000: 2348 changed, 169259 examined... 001: 538 changed, 10891 examined... 002: 152 changed, 3121 examined... 003: 76 changed, 940 examined... 004: 34 changed, 430 examined... 005: 11 changed, 182 examined... 006: 7 changed, 81 examined... 007: 4 changed, 45 examined... 008: 0 changed, 26 examined... 171 labels changed using aseg 000: 48 total segments, 15 labels (97 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1084 vertices marked for relabeling... 1084 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 9 seconds. @#@FSTIME 2025:02:18:11:37:33 mris_ca_label N 11 e 8.68 S 0.38 U 8.27 P 99% M 1008980 F 0 R 329762 W 0 c 40 w 3 I 42952 O 2648 L 1.05 1.11 1.09 @#@FSLOADPOST 2025:02:18:11:37:42 mris_ca_label N 11 1.04 1.11 1.09 #----------------------------------------- #@# WM/GM Contrast lh Tue Feb 18 11:37:42 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts pctsurfcon --s sub-M137 --lh-only Log file is /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts/pctsurfcon.log Tue Feb 18 11:37:42 CST 2025 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts /home/tonglab/freesurfer/bin/pctsurfcon pctsurfcon 7.4.1 Linux leia 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /home/tonglab/freesurfer mri_vol2surf --mov /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.wm.mgh --regheader sub-M137 --cortex srcvol = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/orig.mgz as target reference. -------- original matrix ----------- -0.99997 -0.00804 -0.00040 -0.00005; 0.00079 -0.14699 0.98914 -0.00003; 0.00801 -0.98911 -0.14699 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Reading surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 152659 Masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.wm.mgh Dim: 163004 1 1 mri_vol2surf done mri_vol2surf --mov /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.gm.mgh --projfrac 0.3 --regheader sub-M137 --cortex srcvol = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/orig.mgz as target reference. -------- original matrix ----------- -0.99997 -0.00804 -0.00040 -0.00005; 0.00079 -0.14699 0.98914 -0.00003; 0.00801 -0.98911 -0.14699 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Reading surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Done reading source surface Reading thickness /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 160617 Masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.gm.mgh Dim: 163004 1 1 mri_vol2surf done mri_concat /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.wm.mgh /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.50960/lh.gm.mgh --paired-diff-norm --mul 100 --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.w-g.pct.mgh mri_segstats --in /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.w-g.pct.mgh --annot sub-M137 lh aparc --sum /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/stats/lh.w-g.pct.stats --snr 7.4.1 cwd cmdline mri_segstats --in /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.w-g.pct.mgh --annot sub-M137 lh aparc --sum /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/stats/lh.w-g.pct.stats --snr sysname Linux hostname leia machine x86_64 user tonglab whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot Seg base 1000 MRISannot2seg(): nhits = 154444 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.w-g.pct.mgh Vertex Area is 0.66938 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2025:02:18:11:37:42 pctsurfcon N 3 e 10.78 S 0.96 U 9.70 P 98% M 1438412 F 24 R 794759 W 0 c 60 w 90 I 234912 O 3952 L 1.04 1.11 1.09 @#@FSLOADPOST 2025:02:18:11:37:53 pctsurfcon N 3 1.11 1.12 1.09 #----------------------------------------- #@# WM/GM Contrast rh Tue Feb 18 11:37:53 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts pctsurfcon --s sub-M137 --rh-only Log file is /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts/pctsurfcon.log Tue Feb 18 11:37:53 CST 2025 setenv SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer cd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts /home/tonglab/freesurfer/bin/pctsurfcon pctsurfcon 7.4.1 Linux leia 6.5.0-27-generic #28~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 15 10:51:06 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /home/tonglab/freesurfer mri_vol2surf --mov /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.wm.mgh --regheader sub-M137 --cortex srcvol = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/orig.mgz as target reference. -------- original matrix ----------- -0.99997 -0.00804 -0.00040 -0.00005; 0.00079 -0.14699 0.98914 -0.00003; 0.00801 -0.98911 -0.14699 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Reading surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -1 -1 1 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 158475 Masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.wm.mgh Dim: 169259 1 1 mri_vol2surf done mri_vol2surf --mov /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.gm.mgh --projfrac 0.3 --regheader sub-M137 --cortex srcvol = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/orig.mgz as target reference. -------- original matrix ----------- -0.99997 -0.00804 -0.00040 -0.00005; 0.00079 -0.14699 0.98914 -0.00003; 0.00801 -0.98911 -0.14699 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Reading surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Done reading source surface Reading thickness /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface Projecting 0.3 0.3 1 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 166699 Masking with /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.gm.mgh Dim: 169259 1 1 mri_vol2surf done mri_concat /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.wm.mgh /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/tmp.pctsurfcon.51026/rh.gm.mgh --paired-diff-norm --mul 100 --o /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.w-g.pct.mgh mri_segstats --in /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.w-g.pct.mgh --annot sub-M137 rh aparc --sum /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/stats/rh.w-g.pct.stats --snr 7.4.1 cwd cmdline mri_segstats --in /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.w-g.pct.mgh --annot sub-M137 rh aparc --sum /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/stats/rh.w-g.pct.stats --snr sysname Linux hostname leia machine x86_64 user tonglab whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot Seg base 2000 MRISannot2seg(): nhits = 160463 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.w-g.pct.mgh Vertex Area is 0.661302 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2025:02:18:11:37:53 pctsurfcon N 3 e 10.68 S 0.97 U 9.70 P 99% M 1445604 F 0 R 791926 W 0 c 186 w 67 I 0 O 4096 L 1.11 1.12 1.09 @#@FSLOADPOST 2025:02:18:11:38:03 pctsurfcon N 3 1.09 1.12 1.09 #----------------------------------------- #@# Relabel Hypointensities Tue Feb 18 11:38:03 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 3432 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 2301 voxels changed to hypointensity... 5667 hypointense voxels neighboring cortex changed @#@FSTIME 2025:02:18:11:38:03 mri_relabel_hypointensities N 3 e 11.81 S 0.43 U 11.37 P 99% M 515440 F 11 R 362657 W 0 c 50 w 9 I 1848 O 768 L 1.09 1.12 1.09 @#@FSLOADPOST 2025:02:18:11:38:15 mri_relabel_hypointensities N 3 1.08 1.11 1.09 #----------------------------------------- #@# APas-to-ASeg Tue Feb 18 11:38:15 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz --threads 1 --lh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer outvol aseg.mgz 16 avail.processors, using 1 Loading aseg.presurf.hypos.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/ribbon.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1056076 mri_surf2volseg done @#@FSTIME 2025:02:18:11:38:15 mri_surf2volseg N 20 e 16.62 S 0.32 U 16.26 P 99% M 1032956 F 8 R 287667 W 0 c 69 w 6 I 1360 O 792 L 1.08 1.11 1.09 @#@FSLOADPOST 2025:02:18:11:38:32 mri_surf2volseg N 20 1.05 1.11 1.09 mri_brainvol_stats --subject sub-M137 ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 1789199.0 #CBVS2 BrainSegVol 1280472.0 #CBVS2 BrainSegVolNotVent 1259472.0 #CBVS2 SupraTentVol 1128302.0 #CBVS2 SupraTentVolNotVent 1107302.0 #CBVS2 lhCtxGM 249223.1 #CBVS2 rhCtxGM 262355.5 #CBVS2 lhCerebralWM 260092.0 #CBVS2 rhCerebralWM 275012.0 #CBVS2 SubCortGMVol 63664.0 #CBVS2 CerebellumVol 152170.0 #CBVS2 CerebellumGMVol 119489.0 #CBVS2 VentChorVol 16232.0 #CBVS2 3rd4th5thCSF 4768.0 #CBVS2 AllCSF 21000.0 #CBVS2 CCVol 4576.0 @#@FSTIME 2025:02:18:11:38:32 mri_brainvol_stats N 2 e 3.72 S 0.17 U 3.54 P 99% M 259072 F 25 R 142574 W 0 c 15 w 21 I 4312 O 8 L 1.05 1.11 1.09 @#@FSLOADPOST 2025:02:18:11:38:36 mri_brainvol_stats N 2 1.05 1.11 1.09 #----------------------------------------- #@# AParc-to-ASeg aparc Tue Feb 18 11:38:36 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot 1000 --lh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot 2000 --rh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer outvol aparc+aseg.mgz 16 avail.processors, using 1 Loading aseg.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8560 vertices from lh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8796 vertices from rh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 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1.05 1.10 1.09 @#@FSLOADPOST 2025:02:18:11:40:19 mri_surf2volseg N 25 1.45 1.22 1.13 #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Tue Feb 18 11:40:19 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer outvol aparc.a2009s+aseg.mgz 16 avail.processors, using 1 Loading aseg.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8560 vertices from lh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.a2009s.annot Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8796 vertices from rh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 0 ndotcheck = 19340 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 1039332 mri_surf2volseg done @#@FSTIME 2025:02:18:11:40:19 mri_surf2volseg N 25 e 106.76 S 0.36 U 106.39 P 99% M 1016432 F 0 R 279181 W 0 c 436 w 1 I 0 O 976 L 1.45 1.22 1.13 @#@FSLOADPOST 2025:02:18:11:42:05 mri_surf2volseg N 25 1.29 1.24 1.15 #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Tue Feb 18 11:42:05 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer outvol aparc.DKTatlas+aseg.mgz 16 avail.processors, using 1 Loading aseg.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8560 vertices from lh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.DKTatlas.annot Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8796 vertices from rh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 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/media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot 3000 --lh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label --lh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white --lh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial --rh-annot /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot 4000 --rh-cortex-mask /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label --rh-white /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white --rh-pial /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer outvol wmparc.mgz 16 avail.processors, using 1 Loading aparc+aseg.mgz Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8560 vertices from lh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.aparc.annot Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8796 vertices from rh hemi Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 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mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-M137 --surf-wm-vol --ctab /home/tonglab/freesurfer/WMParcStatsLUT.txt --etiv setting seed for random number genererator to 1234 7.4.1 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-M137 --surf-wm-vol --ctab /home/tonglab/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname leia machine x86_64 user tonglab whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2025:02:18:11:44:38 mri_segstats N 24 e 293.87 S 0.63 U 293.19 P 99% M 239864 F 2 R 1206312 W 0 c 1338 w 5 I 3376 O 24 L 1.23 1.23 1.15 @#@FSLOADPOST 2025:02:18:11:49:32 mri_segstats N 24 1.21 1.17 1.15 #----------------------------------------- #@# Parcellation Stats lh Tue Feb 18 11:49:32 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-M137 lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1894 1270 2969 2.422 0.389 0.101 0.019 14 1.5 bankssts 1851 1318 3449 2.345 0.700 0.133 0.028 26 2.2 caudalanteriorcingulate 4609 2989 7225 2.260 0.523 0.105 0.020 42 3.8 caudalmiddlefrontal 2591 1817 3551 1.863 0.646 0.141 0.035 37 3.8 cuneus 602 405 1369 2.385 1.033 0.118 0.037 5 0.9 entorhinal 5380 3687 9328 2.193 0.699 0.119 0.031 78 6.1 fusiform 8655 5626 14239 2.402 0.468 0.117 0.026 87 9.1 inferiorparietal 5447 3937 9827 2.122 0.722 0.130 0.033 85 7.2 inferiortemporal 1669 1281 3006 2.301 0.696 0.149 0.042 22 2.8 isthmuscingulate 8016 5118 10512 1.942 0.557 0.127 0.032 97 10.3 lateraloccipital 4024 2939 6838 2.143 0.556 0.127 0.028 47 4.7 lateralorbitofrontal 4109 2936 5931 1.941 0.566 0.131 0.028 43 5.1 lingual 3225 2268 5222 2.029 0.653 0.112 0.028 46 3.5 medialorbitofrontal 5366 3754 10442 2.285 0.667 0.123 0.029 76 6.6 middletemporal 1327 869 2329 2.347 0.851 0.094 0.023 9 1.3 parahippocampal 2314 1398 3681 2.456 0.547 0.093 0.020 14 1.8 paracentral 3417 2422 5624 2.107 0.460 0.116 0.023 34 3.4 parsopercularis 883 644 1734 2.162 0.539 0.127 0.028 10 0.9 parsorbitalis 2382 1791 4097 2.074 0.426 0.127 0.025 28 2.6 parstriangularis 2025 1372 2218 1.818 0.429 0.104 0.021 13 1.9 pericalcarine 7521 4808 10126 1.936 0.479 0.105 0.023 57 7.1 postcentral 2311 1667 4460 2.503 0.876 0.131 0.031 31 2.8 posteriorcingulate 10115 6366 16445 2.403 0.556 0.104 0.023 75 9.8 precentral 7229 5215 12700 2.391 0.498 0.129 0.029 76 8.7 precuneus 1670 1248 3350 2.324 0.547 0.128 0.031 26 2.1 rostralanteriorcingulate 8674 6207 13331 1.924 0.453 0.128 0.029 133 9.9 rostralmiddlefrontal 15467 9779 25620 2.366 0.607 0.111 0.029 176 18.2 superiorfrontal 12242 7612 16724 2.082 0.456 0.106 0.025 111 11.7 superiorparietal 6834 4558 11173 2.194 0.606 0.097 0.021 51 6.3 superiortemporal 6522 4342 11151 2.390 0.485 0.120 0.024 76 6.7 supramarginal 492 375 1037 2.125 0.390 0.168 0.045 13 1.0 frontalpole 797 403 613 1.253 0.741 0.165 0.078 29 3.0 temporalpole 640 429 1059 2.265 0.371 0.137 0.024 8 0.6 transversetemporal 4144 2902 7552 2.559 0.724 0.131 0.040 62 6.5 insula @#@FSTIME 2025:02:18:11:49:32 mris_anatomical_stats N 14 e 11.08 S 0.16 U 10.89 P 99% M 572052 F 8 R 157215 W 0 c 49 w 7 I 1448 O 32 L 1.21 1.17 1.15 @#@FSLOADPOST 2025:02:18:11:49:43 mris_anatomical_stats N 14 1.18 1.17 1.14 mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-M137 lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1894 1166 2969 2.422 0.389 0.111 0.030 27 2.1 bankssts 1851 1608 3449 2.345 0.700 0.194 0.063 238 4.5 caudalanteriorcingulate 4609 3386 7225 2.260 0.523 0.118 0.025 47 4.5 caudalmiddlefrontal 2591 2195 3551 1.863 0.646 0.144 0.035 43 3.9 cuneus 602 688 1369 2.385 1.033 0.249 0.071 15 2.3 entorhinal 5380 4679 9328 2.193 0.699 0.153 0.042 94 9.1 fusiform 8655 6263 14239 2.402 0.468 0.120 0.030 109 9.8 inferiorparietal 5447 5174 9827 2.122 0.722 0.172 0.041 83 10.3 inferiortemporal 1669 1562 3006 2.301 0.696 0.191 0.060 62 4.3 isthmuscingulate 8016 5863 10512 1.942 0.557 0.126 0.033 204 10.5 lateraloccipital 4024 3656 6838 2.143 0.556 0.170 0.042 73 7.0 lateralorbitofrontal 4109 3449 5931 1.941 0.566 0.144 0.036 85 6.2 lingual 3225 3045 5222 2.029 0.653 0.172 0.041 60 5.9 medialorbitofrontal 5366 5276 10442 2.285 0.667 0.162 0.036 64 8.6 middletemporal 1327 1162 2329 2.347 0.851 0.162 0.043 15 2.9 parahippocampal 2314 1602 3681 2.456 0.547 0.103 0.024 25 2.0 paracentral 3417 2931 5624 2.107 0.460 0.144 0.031 36 4.7 parsopercularis 883 972 1734 2.162 0.539 0.192 0.039 14 1.8 parsorbitalis 2382 2155 4097 2.074 0.426 0.164 0.038 33 3.9 parstriangularis 2025 1172 2218 1.818 0.429 0.097 0.023 21 1.8 pericalcarine 7521 5766 10126 1.936 0.479 0.119 0.025 67 7.8 postcentral 2311 1897 4460 2.503 0.876 0.157 0.048 102 5.0 posteriorcingulate 10115 7269 16445 2.403 0.556 0.108 0.024 106 9.5 precentral 7229 5518 12700 2.391 0.498 0.130 0.032 214 8.7 precuneus 1670 1698 3350 2.324 0.547 0.186 0.048 30 3.4 rostralanteriorcingulate 8674 7768 13331 1.924 0.453 0.167 0.034 113 13.8 rostralmiddlefrontal 15467 11865 25620 2.366 0.607 0.125 0.027 162 17.6 superiorfrontal 12242 8651 16724 2.082 0.456 0.109 0.022 116 10.9 superiorparietal 6834 5655 11173 2.194 0.606 0.133 0.033 68 9.7 superiortemporal 6522 4998 11151 2.390 0.485 0.129 0.032 125 7.5 supramarginal 492 658 1037 2.125 0.390 0.239 0.053 9 1.2 frontalpole 797 543 613 1.253 0.741 0.192 0.077 23 2.5 temporalpole 640 541 1059 2.265 0.371 0.152 0.039 11 1.0 transversetemporal 4144 3076 7552 2.559 0.724 0.162 0.055 99 8.0 insula @#@FSTIME 2025:02:18:11:49:43 mris_anatomical_stats N 14 e 10.93 S 0.18 U 10.74 P 99% M 572108 F 0 R 157220 W 0 c 49 w 1 I 0 O 32 L 1.18 1.17 1.14 @#@FSLOADPOST 2025:02:18:11:49:54 mris_anatomical_stats N 14 1.15 1.16 1.14 #----------------------------------------- #@# Parcellation Stats rh Tue Feb 18 11:49:54 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-M137 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1771 1213 2866 2.553 0.449 0.117 0.022 15 1.8 bankssts 1621 1154 2994 2.323 0.627 0.123 0.023 21 1.6 caudalanteriorcingulate 4088 2462 6680 2.481 0.571 0.104 0.023 36 4.1 caudalmiddlefrontal 2833 1993 3804 1.767 0.460 0.153 0.036 44 4.5 cuneus 530 394 1553 3.075 0.745 0.128 0.026 5 0.5 entorhinal 5078 3649 9692 2.329 0.626 0.122 0.027 60 5.6 fusiform 11534 7298 15308 2.096 0.554 0.116 0.027 101 13.7 inferiorparietal 5752 3996 10318 2.239 0.617 0.125 0.028 87 6.2 inferiortemporal 1327 983 2455 2.334 0.940 0.140 0.046 17 2.1 isthmuscingulate 9097 6049 11683 1.835 0.632 0.133 0.033 102 12.6 lateraloccipital 4205 3067 7499 2.314 0.552 0.130 0.033 55 5.5 lateralorbitofrontal 4363 3119 6774 2.007 0.567 0.132 0.030 49 5.9 lingual 3804 2699 6227 2.115 0.623 0.121 0.031 54 4.5 medialorbitofrontal 6074 4067 11995 2.501 0.634 0.117 0.026 71 6.2 middletemporal 1308 828 2437 2.597 0.675 0.097 0.026 12 1.3 parahippocampal 3246 2001 5032 2.357 0.532 0.099 0.021 21 2.9 paracentral 2520 1710 4657 2.510 0.518 0.112 0.022 22 2.2 parsopercularis 1161 869 2241 2.178 0.561 0.154 0.039 19 1.8 parsorbitalis 2432 1765 4256 2.174 0.496 0.133 0.030 31 3.0 parstriangularis 2412 1685 3040 1.926 0.474 0.116 0.026 21 2.6 pericalcarine 8073 4994 10628 1.981 0.560 0.093 0.020 55 6.3 postcentral 2362 1695 4750 2.645 0.779 0.137 0.033 31 3.4 posteriorcingulate 10019 6175 16946 2.535 0.567 0.103 0.022 77 9.1 precentral 8007 5419 13513 2.393 0.558 0.117 0.024 71 7.9 precuneus 1158 853 2367 2.505 0.502 0.126 0.030 16 1.4 rostralanteriorcingulate 10093 7008 15861 2.034 0.468 0.128 0.029 138 12.6 rostralmiddlefrontal 15500 10084 26582 2.461 0.555 0.119 0.030 169 19.3 superiorfrontal 11210 6807 13985 1.997 0.457 0.105 0.024 97 11.0 superiorparietal 6762 4364 13294 2.723 0.621 0.111 0.025 63 7.3 superiortemporal 6680 4224 11256 2.493 0.472 0.113 0.025 68 7.2 supramarginal 508 416 1259 2.269 0.465 0.188 0.051 15 1.1 frontalpole 801 631 2181 2.781 0.837 0.146 0.041 16 1.2 temporalpole 554 343 931 2.444 0.294 0.114 0.020 6 0.4 transversetemporal 3580 2480 7229 2.909 0.649 0.120 0.034 38 4.6 insula @#@FSTIME 2025:02:18:11:49:54 mris_anatomical_stats N 14 e 12.00 S 0.19 U 11.80 P 99% M 593104 F 0 R 167375 W 0 c 51 w 1 I 0 O 32 L 1.15 1.16 1.14 @#@FSLOADPOST 2025:02:18:11:50:06 mris_anatomical_stats N 14 1.20 1.17 1.15 mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-M137 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1771 1042 2866 2.553 0.449 0.116 0.036 52 2.2 bankssts 1621 1420 2994 2.323 0.627 0.174 0.058 43 3.8 caudalanteriorcingulate 4088 2917 6680 2.481 0.571 0.115 0.025 58 4.1 caudalmiddlefrontal 2833 2516 3804 1.767 0.460 0.167 0.044 61 5.3 cuneus 530 631 1553 3.075 0.745 0.269 0.072 31 1.8 entorhinal 5078 4584 9692 2.329 0.626 0.153 0.038 76 8.2 fusiform 11534 7873 15308 2.096 0.554 0.111 0.028 205 13.0 inferiorparietal 5752 5174 10318 2.239 0.617 0.151 0.037 72 8.6 inferiortemporal 1327 1246 2455 2.334 0.940 0.183 0.054 30 2.8 isthmuscingulate 9097 7008 11683 1.835 0.632 0.138 0.039 211 13.9 lateraloccipital 4205 3713 7499 2.314 0.552 0.175 0.048 94 7.9 lateralorbitofrontal 4363 3821 6774 2.007 0.567 0.143 0.035 87 6.5 lingual 3804 3370 6227 2.115 0.623 0.168 0.046 68 7.3 medialorbitofrontal 6074 5313 11995 2.501 0.634 0.143 0.036 108 8.3 middletemporal 1308 1081 2437 2.597 0.675 0.162 0.048 29 2.9 parahippocampal 3246 2261 5032 2.357 0.532 0.108 0.023 36 2.9 paracentral 2520 1997 4657 2.510 0.518 0.142 0.036 37 4.1 parsopercularis 1161 1176 2241 2.178 0.561 0.179 0.040 18 2.0 parsorbitalis 2432 2125 4256 2.174 0.496 0.157 0.036 118 3.4 parstriangularis 2412 1583 3040 1.926 0.474 0.115 0.028 41 2.5 pericalcarine 8073 5881 10628 1.981 0.560 0.110 0.023 65 7.7 postcentral 2362 2016 4750 2.645 0.779 0.168 0.053 82 4.2 posteriorcingulate 10019 7101 16946 2.535 0.567 0.108 0.023 110 9.3 precentral 8007 5794 13513 2.393 0.558 0.128 0.031 141 9.8 precuneus 1158 1078 2367 2.505 0.502 0.185 0.048 37 2.2 rostralanteriorcingulate 10093 8638 15861 2.034 0.468 0.151 0.032 145 13.9 rostralmiddlefrontal 15500 11592 26582 2.461 0.555 0.125 0.030 206 17.7 superiorfrontal 11210 7556 13985 1.997 0.457 0.103 0.022 109 9.9 superiorparietal 6762 5336 13294 2.723 0.621 0.135 0.036 89 9.8 superiortemporal 6680 4873 11256 2.493 0.472 0.123 0.032 80 8.5 supramarginal 508 749 1259 2.269 0.465 0.255 0.048 9 1.1 frontalpole 801 1011 2181 2.781 0.837 0.227 0.054 15 2.0 temporalpole 554 442 931 2.444 0.294 0.148 0.047 20 0.8 transversetemporal 3580 2434 7229 2.909 0.649 0.161 0.062 159 6.9 insula @#@FSTIME 2025:02:18:11:50:06 mris_anatomical_stats N 14 e 11.55 S 0.23 U 11.31 P 99% M 592836 F 0 R 167376 W 0 c 65 w 1 I 0 O 32 L 1.20 1.17 1.15 @#@FSLOADPOST 2025:02:18:11:50:17 mris_anatomical_stats N 14 1.16 1.16 1.14 #----------------------------------------- #@# Parcellation Stats 2 lh Tue Feb 18 11:50:17 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-M137 lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1319 942 1891 1.818 0.468 0.135 0.032 20 1.8 G_and_S_frontomargin 1453 988 2182 1.987 0.440 0.111 0.023 12 1.3 G_and_S_occipital_inf 1815 1054 2637 2.194 0.647 0.107 0.026 14 2.1 G_and_S_paracentral 1853 1267 3261 2.290 0.498 0.119 0.026 18 1.8 G_and_S_subcentral 847 639 1528 1.906 0.445 0.162 0.048 20 1.5 G_and_S_transv_frontopol 3071 2232 5419 2.186 0.559 0.119 0.028 45 3.9 G_and_S_cingul-Ant 2104 1471 3844 2.435 0.543 0.112 0.023 18 2.0 G_and_S_cingul-Mid-Ant 1900 1316 3691 2.663 0.632 0.123 0.026 20 2.1 G_and_S_cingul-Mid-Post 744 554 1871 2.784 0.721 0.152 0.040 11 1.2 G_cingul-Post-dorsal 266 185 444 2.160 0.739 0.159 0.054 4 0.5 G_cingul-Post-ventral 2393 1579 3387 1.876 0.700 0.145 0.045 45 4.1 G_cuneus 1940 1322 3780 2.323 0.441 0.121 0.026 23 2.0 G_front_inf-Opercular 467 331 1044 2.365 0.366 0.130 0.026 6 0.6 G_front_inf-Orbital 1705 1286 3202 2.119 0.462 0.139 0.028 26 2.0 G_front_inf-Triangul 5266 3454 9877 2.282 0.534 0.121 0.026 97 5.2 G_front_middle 10294 6224 18694 2.507 0.647 0.116 0.034 139 13.7 G_front_sup 827 575 1742 2.705 0.824 0.127 0.041 11 1.3 G_Ins_lg_and_S_cent_ins 826 617 1939 2.548 0.685 0.156 0.055 12 1.6 G_insular_short 2799 1644 4696 2.323 0.459 0.118 0.031 40 3.2 G_occipital_middle 2305 1460 2695 1.798 0.414 0.130 0.034 27 3.2 G_occipital_sup 2278 1569 5157 2.641 0.535 0.125 0.031 35 2.4 G_oc-temp_lat-fusifor 2666 1943 4327 1.937 0.596 0.144 0.033 34 3.9 G_oc-temp_med-Lingual 1401 933 3119 2.535 0.914 0.107 0.030 15 1.7 G_oc-temp_med-Parahip 2376 1751 5012 2.258 0.557 0.139 0.035 41 3.0 G_orbital 3610 2229 6833 2.507 0.503 0.123 0.031 48 4.2 G_pariet_inf-Angular 3168 2096 6122 2.455 0.466 0.120 0.025 38 3.2 G_pariet_inf-Supramar 4862 2824 7444 2.201 0.438 0.104 0.025 52 4.4 G_parietal_sup 3051 1807 4215 1.971 0.463 0.109 0.027 28 3.3 G_postcentral 3940 2225 7284 2.615 0.554 0.102 0.027 36 4.1 G_precentral 3581 2586 7557 2.459 0.497 0.140 0.033 50 4.7 G_precuneus 995 713 1913 2.067 0.566 0.128 0.035 19 1.4 G_rectus 966 667 1874 2.696 0.872 0.142 0.056 31 2.0 G_subcallosal 468 307 913 2.414 0.317 0.130 0.027 6 0.5 G_temp_sup-G_T_transv 2305 1526 5172 2.556 0.582 0.111 0.028 29 2.6 G_temp_sup-Lateral 868 594 1493 2.153 0.674 0.105 0.026 6 1.0 G_temp_sup-Plan_polar 1317 849 2169 2.320 0.638 0.108 0.025 17 1.4 G_temp_sup-Plan_tempo 3228 2287 7328 2.401 0.764 0.140 0.038 74 4.6 G_temporal_inf 3098 2142 7252 2.481 0.637 0.127 0.030 51 3.7 G_temporal_middle 379 259 443 1.952 0.356 0.093 0.018 1 0.2 Lat_Fis-ant-Horizont 371 275 451 1.751 0.359 0.101 0.015 1 0.3 Lat_Fis-ant-Vertical 1197 794 1596 2.377 0.511 0.104 0.019 6 1.0 Lat_Fis-post 2250 1428 2453 1.676 0.599 0.151 0.048 37 4.4 Pole_occipital 1736 932 1402 1.278 0.601 0.159 0.077 59 5.6 Pole_temporal 2465 1814 3064 1.975 0.573 0.123 0.027 19 3.2 S_calcarine 3939 2653 4866 2.045 0.575 0.102 0.020 20 3.5 S_central 1292 894 1908 2.349 0.503 0.104 0.018 8 1.0 S_cingul-Marginalis 572 403 883 2.360 0.442 0.106 0.019 3 0.5 S_circular_insula_ant 1644 1107 2153 2.176 0.777 0.084 0.016 5 1.1 S_circular_insula_inf 1952 1337 2521 2.166 0.388 0.104 0.022 9 1.9 S_circular_insula_sup 1032 744 1029 1.534 0.272 0.098 0.017 4 0.9 S_collat_transv_ant 389 277 443 2.010 0.301 0.151 0.030 4 0.6 S_collat_transv_post 2960 2150 3998 1.887 0.371 0.115 0.023 27 3.0 S_front_inf 1332 968 1569 1.697 0.370 0.108 0.019 8 1.1 S_front_middle 4168 2827 5819 2.123 0.395 0.102 0.022 36 3.8 S_front_sup 424 291 500 2.129 0.391 0.109 0.019 3 0.4 S_interm_prim-Jensen 4507 3070 5941 2.146 0.401 0.104 0.018 28 3.6 S_intrapariet_and_P_trans 888 597 1199 2.209 0.471 0.121 0.021 8 0.9 S_oc_middle_and_Lunatus 1665 1118 2038 2.078 0.416 0.107 0.022 9 1.7 S_oc_sup_and_transversal 1014 688 1209 1.939 0.423 0.103 0.017 6 0.8 S_occipital_ant 983 712 1339 1.913 0.476 0.116 0.021 10 0.9 S_oc-temp_lat 2836 1918 3609 2.062 0.515 0.091 0.014 14 1.7 S_oc-temp_med_and_Lingual 406 301 503 1.762 0.311 0.125 0.025 3 0.5 S_orbital_lateral 655 471 877 2.056 0.568 0.115 0.024 3 0.7 S_orbital_med-olfact 1366 1012 1900 1.866 0.506 0.123 0.028 15 1.6 S_orbital-H_Shaped 3061 2096 4005 2.137 0.534 0.115 0.024 23 3.0 S_parieto_occipital 1986 1457 2393 1.828 0.705 0.126 0.027 24 2.3 S_pericallosal 3247 2201 4230 2.033 0.414 0.099 0.017 21 2.3 S_postcentral 2230 1556 3042 1.958 0.404 0.106 0.019 19 1.9 S_precentral-inf-part 2137 1468 2945 2.191 0.430 0.099 0.017 13 1.6 S_precentral-sup-part 826 587 858 1.666 0.385 0.106 0.014 5 0.6 S_suborbital 1115 826 1684 2.406 0.438 0.122 0.024 8 1.2 S_subparietal 1605 1222 2405 1.984 0.563 0.128 0.032 13 2.1 S_temporal_inf 7134 4882 10291 2.250 0.520 0.105 0.020 50 6.4 S_temporal_sup 309 229 357 1.754 0.336 0.122 0.012 2 0.2 S_temporal_transverse @#@FSTIME 2025:02:18:11:50:18 mris_anatomical_stats N 14 e 11.44 S 0.22 U 11.20 P 99% M 572112 F 0 R 156454 W 0 c 523 w 1 I 0 O 48 L 1.16 1.16 1.14 @#@FSLOADPOST 2025:02:18:11:50:29 mris_anatomical_stats N 14 1.13 1.16 1.14 #----------------------------------------- #@# Parcellation Stats 2 rh Tue Feb 18 11:50:29 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-M137 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 949 734 1553 1.919 0.447 0.156 0.039 18 1.7 G_and_S_frontomargin 1804 1308 3383 2.271 0.711 0.150 0.038 25 2.8 G_and_S_occipital_inf 1801 1023 2717 2.250 0.555 0.102 0.025 15 1.8 G_and_S_paracentral 1959 1310 3905 2.712 0.518 0.114 0.025 20 1.8 G_and_S_subcentral 1271 954 2236 1.943 0.444 0.157 0.047 36 2.7 G_and_S_transv_frontopol 4191 3025 7743 2.415 0.460 0.120 0.026 48 4.6 G_and_S_cingul-Ant 1918 1356 3642 2.578 0.427 0.117 0.024 19 1.9 G_and_S_cingul-Mid-Ant 2077 1432 3912 2.646 0.545 0.116 0.026 17 2.2 G_and_S_cingul-Mid-Post 690 497 1849 3.159 0.633 0.168 0.048 12 1.3 G_cingul-Post-dorsal 340 241 580 2.042 0.973 0.142 0.052 4 0.5 G_cingul-Post-ventral 2544 1787 3437 1.725 0.474 0.159 0.038 43 4.3 G_cuneus 1858 1261 4517 2.811 0.482 0.117 0.026 22 1.9 G_front_inf-Opercular 403 319 996 2.341 0.506 0.144 0.036 7 0.6 G_front_inf-Orbital 1113 804 2290 2.340 0.413 0.145 0.038 20 1.6 G_front_inf-Triangul 4795 2972 9440 2.505 0.560 0.125 0.029 74 5.8 G_front_middle 10972 6873 20124 2.535 0.607 0.123 0.034 141 15.3 G_front_sup 671 467 1506 2.995 0.642 0.124 0.039 11 0.8 G_Ins_lg_and_S_cent_ins 788 582 2257 3.113 0.842 0.154 0.054 15 1.6 G_insular_short 3289 2084 3626 1.613 0.470 0.124 0.033 30 4.5 G_occipital_middle 2161 1392 2521 1.702 0.529 0.140 0.038 28 3.6 G_occipital_sup 2157 1579 4873 2.502 0.570 0.127 0.033 32 2.8 G_oc-temp_lat-fusifor 2570 1866 4369 2.030 0.599 0.144 0.037 33 4.1 G_oc-temp_med-Lingual 1366 923 3686 2.961 0.793 0.119 0.035 17 1.7 G_oc-temp_med-Parahip 2905 2209 6522 2.346 0.554 0.147 0.040 55 4.2 G_orbital 4740 2732 7233 2.213 0.597 0.123 0.034 56 6.8 G_pariet_inf-Angular 3166 1947 5796 2.590 0.486 0.116 0.028 38 3.6 G_pariet_inf-Supramar 4029 2109 5401 2.139 0.447 0.096 0.024 40 3.8 G_parietal_sup 2932 1651 3722 1.900 0.474 0.100 0.024 27 2.7 G_postcentral 3973 2148 7475 2.698 0.545 0.098 0.023 36 3.7 G_precentral 3250 2193 6501 2.462 0.546 0.117 0.025 34 3.1 G_precuneus 931 656 1683 2.022 0.599 0.132 0.038 17 1.3 G_rectus 597 380 842 2.135 0.803 0.096 0.039 6 0.7 G_subcallosal 473 279 849 2.534 0.327 0.104 0.019 5 0.3 G_temp_sup-G_T_transv 2279 1429 5482 2.922 0.562 0.128 0.031 31 2.8 G_temp_sup-Lateral 925 625 2384 3.296 0.714 0.103 0.024 5 1.0 G_temp_sup-Plan_polar 1254 750 1956 2.368 0.515 0.114 0.036 14 1.7 G_temp_sup-Plan_tempo 2959 2037 6499 2.445 0.693 0.135 0.037 54 3.8 G_temporal_inf 3545 2304 8296 2.713 0.607 0.122 0.030 54 4.0 G_temporal_middle 425 284 498 1.914 0.418 0.117 0.024 3 0.4 Lat_Fis-ant-Horizont 179 133 331 2.555 0.374 0.124 0.019 1 0.2 Lat_Fis-ant-Vertical 1529 1008 2081 2.461 0.412 0.100 0.019 8 1.3 Lat_Fis-post 3588 2385 5094 1.878 0.631 0.131 0.032 45 4.6 Pole_occipital 1818 1448 4660 2.448 0.667 0.156 0.040 48 2.6 Pole_temporal 2591 1805 3407 2.150 0.654 0.119 0.028 22 3.1 S_calcarine 3829 2569 4418 1.925 0.593 0.093 0.018 18 3.1 S_central 1759 1195 2530 2.256 0.479 0.111 0.020 13 1.6 S_cingul-Marginalis 729 478 1041 2.514 0.593 0.095 0.015 3 0.5 S_circular_insula_ant 1464 962 2326 2.785 0.624 0.078 0.015 5 1.0 S_circular_insula_inf 1577 1040 2310 2.716 0.378 0.097 0.019 6 1.3 S_circular_insula_sup 1254 825 1652 2.137 0.394 0.083 0.012 5 0.7 S_collat_transv_ant 570 391 681 2.053 0.363 0.128 0.026 5 0.6 S_collat_transv_post 2473 1697 2903 1.841 0.360 0.113 0.022 18 2.4 S_front_inf 3050 2096 4112 1.948 0.439 0.116 0.023 27 3.0 S_front_middle 3604 2398 5149 2.213 0.394 0.099 0.019 21 3.0 S_front_sup 148 116 242 2.170 0.323 0.110 0.017 1 0.1 S_interm_prim-Jensen 4678 3091 5775 2.004 0.376 0.094 0.016 28 3.1 S_intrapariet_and_P_trans 1277 868 1092 1.506 0.459 0.150 0.036 17 2.0 S_oc_middle_and_Lunatus 1855 1270 2060 1.934 0.421 0.128 0.029 15 2.4 S_oc_sup_and_transversal 1156 773 1459 2.104 0.394 0.112 0.019 9 1.0 S_occipital_ant 1186 877 1574 1.852 0.433 0.134 0.026 12 1.5 S_oc-temp_lat 2673 1785 3386 2.120 0.503 0.096 0.014 17 1.7 S_oc-temp_med_and_Lingual 386 280 471 1.872 0.338 0.124 0.027 3 0.4 S_orbital_lateral 807 565 1012 2.192 0.739 0.109 0.025 5 0.8 S_orbital_med-olfact 1596 1163 2451 2.154 0.485 0.134 0.033 19 2.4 S_orbital-H_Shaped 3686 2447 4810 2.165 0.545 0.111 0.022 26 3.6 S_parieto_occipital 1734 1237 1760 1.742 0.626 0.127 0.030 22 2.3 S_pericallosal 3370 2239 4065 2.022 0.406 0.094 0.016 16 2.6 S_postcentral 2253 1534 3205 2.258 0.374 0.109 0.019 14 2.0 S_precentral-inf-part 1669 1115 2251 2.305 0.386 0.098 0.017 9 1.3 S_precentral-sup-part 499 386 704 1.791 0.443 0.162 0.026 8 0.6 S_suborbital 1189 853 2183 2.481 0.447 0.120 0.024 10 1.1 S_subparietal 1752 1214 2086 2.023 0.388 0.109 0.018 11 1.6 S_temporal_inf 8206 5536 12345 2.419 0.522 0.109 0.021 54 8.0 S_temporal_sup 259 196 364 2.418 0.331 0.143 0.019 2 0.3 S_temporal_transverse @#@FSTIME 2025:02:18:11:50:29 mris_anatomical_stats N 14 e 12.42 S 0.18 U 12.23 P 99% M 592972 F 0 R 163032 W 0 c 63 w 1 I 0 O 48 L 1.13 1.16 1.14 @#@FSLOADPOST 2025:02:18:11:50:41 mris_anatomical_stats N 14 1.10 1.15 1.14 #----------------------------------------- #@# Parcellation Stats 3 lh Tue Feb 18 11:50:41 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-M137 lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 2648 1870 4773 2.324 0.649 0.125 0.026 31 2.9 caudalanteriorcingulate 5004 3250 7935 2.263 0.514 0.106 0.021 48 4.2 caudalmiddlefrontal 3809 2555 5100 1.922 0.614 0.133 0.036 56 5.5 cuneus 552 373 1330 2.509 0.955 0.117 0.036 5 0.7 entorhinal 4969 3518 9091 2.289 0.624 0.116 0.025 60 4.6 fusiform 8735 5663 14299 2.402 0.466 0.117 0.026 90 9.2 inferiorparietal 5536 3829 9262 2.008 0.754 0.133 0.039 103 8.7 inferiortemporal 1616 1238 2925 2.312 0.697 0.149 0.042 22 2.7 isthmuscingulate 8205 5209 10539 1.923 0.553 0.127 0.032 99 10.5 lateraloccipital 4432 3249 7741 2.198 0.675 0.138 0.035 69 6.3 lateralorbitofrontal 4191 3007 6129 1.937 0.570 0.131 0.029 44 5.2 lingual 2609 1874 4277 2.018 0.682 0.122 0.033 46 3.3 medialorbitofrontal 7052 4959 13161 2.299 0.642 0.121 0.028 87 8.1 middletemporal 1385 912 2432 2.365 0.842 0.096 0.023 9 1.3 parahippocampal 2762 1679 4672 2.542 0.580 0.094 0.020 17 2.2 paracentral 3149 2226 5147 2.115 0.447 0.116 0.024 32 3.2 parsopercularis 998 698 1709 2.149 0.482 0.102 0.019 7 0.8 parsorbitalis 3256 2419 5626 2.064 0.437 0.128 0.025 39 3.6 parstriangularis 1970 1331 2147 1.820 0.431 0.104 0.021 13 1.8 pericalcarine 8411 5385 11280 1.948 0.475 0.107 0.023 66 8.0 postcentral 2540 1840 4837 2.507 0.826 0.133 0.032 34 3.2 posteriorcingulate 9940 6259 16236 2.410 0.556 0.104 0.023 73 9.8 precentral 7048 5097 12616 2.398 0.500 0.132 0.030 79 8.7 precuneus 2385 1740 4365 2.279 0.600 0.123 0.029 33 2.9 rostralanteriorcingulate 5873 4192 8959 1.938 0.457 0.126 0.027 84 6.4 rostralmiddlefrontal 16484 10586 27174 2.284 0.612 0.115 0.031 220 20.1 superiorfrontal 10033 6241 13906 2.101 0.445 0.100 0.021 78 8.6 superiorparietal 8845 5784 13756 2.151 0.658 0.104 0.026 89 10.2 superiortemporal 6101 4053 10503 2.398 0.491 0.119 0.024 69 6.2 supramarginal 650 432 1047 2.226 0.397 0.136 0.023 8 0.6 transversetemporal 3256 2283 5957 2.507 0.652 0.120 0.032 30 4.0 insula @#@FSTIME 2025:02:18:11:50:41 mris_anatomical_stats N 14 e 10.83 S 0.32 U 10.50 P 99% M 572108 F 0 R 156452 W 0 c 189 w 0 I 0 O 32 L 1.10 1.15 1.14 @#@FSLOADPOST 2025:02:18:11:50:52 mris_anatomical_stats N 14 1.17 1.16 1.14 #----------------------------------------- #@# Parcellation Stats 3 rh Tue Feb 18 11:50:52 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-M137 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1737 1239 3183 2.315 0.639 0.123 0.024 22 1.7 caudalanteriorcingulate 4254 2572 6875 2.462 0.572 0.105 0.023 37 4.3 caudalmiddlefrontal 3605 2465 4606 1.762 0.442 0.147 0.036 52 5.6 cuneus 507 374 1516 3.122 0.745 0.126 0.026 5 0.5 entorhinal 4675 3355 8785 2.321 0.620 0.120 0.026 53 4.9 fusiform 11482 7277 15052 2.081 0.545 0.116 0.027 100 13.8 inferiorparietal 6165 4303 11261 2.252 0.623 0.127 0.030 94 6.9 inferiortemporal 1293 957 2354 2.311 0.921 0.139 0.046 17 2.1 isthmuscingulate 9105 6067 11630 1.825 0.633 0.133 0.033 102 12.7 lateraloccipital 4729 3527 8722 2.281 0.550 0.144 0.039 77 7.5 lateralorbitofrontal 4294 3068 6646 2.001 0.566 0.131 0.030 48 5.8 lingual 2609 1895 4496 2.075 0.623 0.130 0.034 42 3.4 medialorbitofrontal 7399 4961 14192 2.498 0.618 0.116 0.025 82 7.5 middletemporal 1356 862 2515 2.599 0.683 0.098 0.025 13 1.4 parahippocampal 3417 2111 5312 2.361 0.528 0.099 0.020 23 3.0 paracentral 2900 1981 5311 2.491 0.526 0.115 0.022 25 2.8 parsopercularis 1046 745 1948 2.220 0.582 0.127 0.027 12 1.2 parsorbitalis 2383 1698 3898 2.110 0.468 0.134 0.032 32 3.0 parstriangularis 2407 1686 3055 1.925 0.472 0.116 0.026 21 2.6 pericalcarine 8769 5401 11322 1.970 0.553 0.094 0.020 60 7.0 postcentral 2451 1754 4880 2.667 0.757 0.138 0.033 32 3.6 posteriorcingulate 9937 6137 16977 2.543 0.566 0.103 0.022 77 9.0 precentral 8171 5496 13934 2.404 0.558 0.117 0.024 73 8.2 precuneus 1664 1172 3036 2.432 0.582 0.117 0.028 21 1.9 rostralanteriorcingulate 7363 5113 11647 2.047 0.474 0.126 0.027 94 8.6 rostralmiddlefrontal 18621 12281 31763 2.396 0.563 0.120 0.031 220 23.7 superiorfrontal 9337 5683 11782 2.012 0.438 0.102 0.022 80 8.4 superiorparietal 8652 5719 17253 2.726 0.609 0.115 0.027 90 9.3 superiortemporal 6343 4019 10751 2.497 0.483 0.114 0.026 66 7.2 supramarginal 541 335 934 2.459 0.309 0.106 0.019 5 0.4 transversetemporal 3251 2243 6655 2.933 0.641 0.114 0.029 32 3.5 insula @#@FSTIME 2025:02:18:11:50:52 mris_anatomical_stats N 14 e 11.40 S 0.21 U 11.17 P 99% M 592856 F 0 R 163028 W 0 c 49 w 1 I 0 O 32 L 1.17 1.16 1.14 @#@FSLOADPOST 2025:02:18:11:51:04 mris_anatomical_stats N 14 1.21 1.17 1.15 #-------------------------------------------- #@# ASeg Stats Tue Feb 18 11:51:04 CST 2025 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137 mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /home/tonglab/freesurfer/ASegStatsLUT.txt --subject sub-M137 setting seed for random number genererator to 1234 7.4.1 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /home/tonglab/freesurfer/ASegStatsLUT.txt --subject sub-M137 sysname Linux hostname leia machine x86_64 user tonglab whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) Computing euler number orig.nofix lheno = -52, rheno = -48 orig.nofix lhholes = 27, rhholes = 25 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2025:02:18:11:51:04 mri_segstats N 32 e 155.21 S 0.49 U 154.66 P 99% M 302844 F 0 R 772006 W 0 c 876 w 7 I 22896 O 24 L 1.21 1.17 1.15 @#@FSLOADPOST 2025:02:18:11:53:39 mri_segstats N 32 1.08 1.12 1.13 /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label #-------------------------------------------- #@# BA_exvivo Labels lh Tue Feb 18 11:53:39 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 390 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4519 mri_label2label: Done @#@FSTIME 2025:02:18:11:53:39 mri_label2label N 12 e 4.67 S 0.19 U 4.41 P 98% M 616556 F 0 R 175298 W 0 c 33 w 12 I 16208 O 336 L 1.08 1.12 1.13 @#@FSLOADPOST 2025:02:18:11:53:44 mri_label2label N 12 1.08 1.12 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 525 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8434 mri_label2label: Done @#@FSTIME 2025:02:18:11:53:44 mri_label2label N 12 e 5.50 S 0.20 U 5.28 P 99% M 616880 F 0 R 175366 W 0 c 19 w 3 I 632 O 576 L 1.08 1.12 1.13 @#@FSLOADPOST 2025:02:18:11:53:49 mri_label2label N 12 1.07 1.12 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 134 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4211 mri_label2label: Done @#@FSTIME 2025:02:18:11:53:49 mri_label2label N 12 e 4.48 S 0.21 U 4.25 P 99% M 616676 F 0 R 175296 W 0 c 35 w 3 I 320 O 272 L 1.07 1.12 1.13 @#@FSLOADPOST 2025:02:18:11:53:54 mri_label2label N 12 1.06 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 310 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6293 mri_label2label: Done @#@FSTIME 2025:02:18:11:53:54 mri_label2label N 12 e 4.99 S 0.21 U 4.76 P 99% M 616940 F 0 R 175332 W 0 c 18 w 3 I 472 O 424 L 1.06 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:53:59 mri_label2label N 12 1.06 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 672 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 6456 mri_label2label: Done @#@FSTIME 2025:02:18:11:53:59 mri_label2label N 12 e 4.86 S 0.19 U 4.65 P 99% M 617064 F 0 R 175332 W 0 c 15 w 2 I 456 O 472 L 1.06 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:54:04 mri_label2label N 12 1.05 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 421 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4491 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:04 mri_label2label N 12 e 4.62 S 0.22 U 4.38 P 99% M 616768 F 0 R 175297 W 0 c 17 w 3 I 320 O 320 L 1.05 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:08 mri_label2label N 12 1.05 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 3936 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 17525 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:08 mri_label2label N 12 e 6.51 S 0.20 U 6.29 P 99% M 617468 F 0 R 175497 W 0 c 20 w 2 I 1056 O 1368 L 1.05 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:15 mri_label2label N 12 1.04 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 928 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 5109 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:15 mri_label2label N 12 e 4.80 S 0.25 U 4.55 P 99% M 616752 F 0 R 175306 W 0 c 22 w 2 I 328 O 392 L 1.04 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:20 mri_label2label N 12 1.04 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-M137 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 1492 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 4914 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:20 mri_label2label N 12 e 4.45 S 0.20 U 4.24 P 99% M 616712 F 0 R 175296 W 0 c 25 w 3 I 272 O 416 L 1.04 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:24 mri_label2label N 12 1.04 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-M137 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 1167 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5808 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:24 mri_label2label N 12 e 4.90 S 0.18 U 4.71 P 99% M 616892 F 0 R 175314 W 0 c 12 w 2 I 376 O 464 L 1.04 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:29 mri_label2label N 12 1.11 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-M137 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 2419 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 10533 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:29 mri_label2label N 12 e 5.53 S 0.21 U 5.30 P 99% M 617144 F 0 R 175388 W 0 c 20 w 3 I 664 O 840 L 1.11 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:54:34 mri_label2label N 12 1.10 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-M137 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 526 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2544 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:34 mri_label2label N 12 e 4.18 S 0.22 U 3.95 P 99% M 616676 F 0 R 175265 W 0 c 13 w 2 I 168 O 224 L 1.10 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:54:39 mri_label2label N 12 1.10 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-M137 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 107 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1397 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:39 mri_label2label N 12 e 4.02 S 0.22 U 3.79 P 99% M 616648 F 0 R 175248 W 0 c 11 w 2 I 120 O 104 L 1.10 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:54:43 mri_label2label N 12 1.09 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-M137 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 123 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1322 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:43 mri_label2label N 12 e 3.94 S 0.18 U 3.76 P 99% M 616648 F 0 R 175253 W 0 c 10 w 3 I 112 O 96 L 1.09 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:47 mri_label2label N 12 1.08 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 142 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 556 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:47 mri_label2label N 12 e 3.97 S 0.20 U 3.76 P 99% M 616364 F 0 R 175233 W 0 c 13 w 3 I 40 O 56 L 1.08 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:51 mri_label2label N 12 1.08 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 192 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 895 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:51 mri_label2label N 12 e 3.97 S 0.19 U 3.77 P 99% M 616496 F 0 R 175237 W 0 c 13 w 3 I 72 O 80 L 1.08 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:55 mri_label2label N 12 1.07 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 448 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 2321 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:55 mri_label2label N 12 e 4.26 S 0.21 U 4.03 P 99% M 616540 F 0 R 175260 W 0 c 19 w 2 I 176 O 200 L 1.07 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:54:59 mri_label2label N 12 1.07 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 610 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2711 mri_label2label: Done @#@FSTIME 2025:02:18:11:54:59 mri_label2label N 12 e 4.37 S 0.24 U 4.12 P 99% M 616700 F 0 R 179456 W 0 c 12 w 3 I 200 O 232 L 1.07 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:55:03 mri_label2label N 12 1.06 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 890 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4767 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:03 mri_label2label N 12 e 4.62 S 0.21 U 4.40 P 99% M 616772 F 0 R 179490 W 0 c 28 w 3 I 360 O 376 L 1.06 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:55:08 mri_label2label N 12 1.06 1.10 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 1139 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 4058 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:08 mri_label2label N 12 e 4.46 S 0.18 U 4.26 P 99% M 616592 F 0 R 175282 W 0 c 19 w 3 I 272 O 336 L 1.06 1.10 1.12 @#@FSLOADPOST 2025:02:18:11:55:12 mri_label2label N 12 1.05 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 334 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1620 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:12 mri_label2label N 12 e 4.03 S 0.19 U 3.83 P 99% M 616516 F 0 R 175252 W 0 c 17 w 3 I 128 O 136 L 1.05 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:55:16 mri_label2label N 12 1.05 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 170 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1176 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:16 mri_label2label N 12 e 3.99 S 0.24 U 3.74 P 99% M 616636 F 0 R 175250 W 0 c 32 w 3 I 96 O 104 L 1.05 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:55:20 mri_label2label N 12 1.05 1.10 1.11 mris_label2annot --s sub-M137 --ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt Number of ctab entries 9 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi lh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.orig Index Offset 0 0 reading lh.FG1.mpm.vpnl.label 1 1376057 FG1 1 reading lh.FG2.mpm.vpnl.label 2 16711935 FG2 2 reading lh.FG3.mpm.vpnl.label 3 16711680 FG3 3 reading lh.FG4.mpm.vpnl.label 4 1705837 FG4 4 reading lh.hOc1.mpm.vpnl.label 5 25600 hOc1 5 reading lh.hOc2.mpm.vpnl.label 6 255 hOc2 6 reading lh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v 7 reading lh.hOc4v.mpm.vpnl.label 8 65535 hOc4v Mapping unhit to unknown Found 146267 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.mpm.vpnl.annot @#@FSTIME 2025:02:18:11:55:20 mris_label2annot N 26 e 0.66 S 0.07 U 0.56 P 95% M 187476 F 7 R 51728 W 0 c 2 w 5 I 1304 O 2552 L 1.05 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:55:21 mris_label2annot N 26 1.05 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 106 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1120 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:21 mri_label2label N 12 e 3.91 S 0.21 U 3.68 P 99% M 616288 F 0 R 175222 W 0 c 14 w 3 I 96 O 88 L 1.05 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:55:25 mri_label2label N 12 1.04 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 225 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2317 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:25 mri_label2label N 12 e 4.59 S 0.17 U 4.40 P 99% M 616548 F 0 R 175263 W 0 c 18 w 2 I 192 O 176 L 1.04 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:55:30 mri_label2label N 12 1.12 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 15 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1519 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:30 mri_label2label N 12 e 4.16 S 0.21 U 3.93 P 99% M 616412 F 0 R 175251 W 0 c 28 w 2 I 136 O 96 L 1.12 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:55:34 mri_label2label N 12 1.11 1.11 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 116 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2112 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:34 mri_label2label N 12 e 4.13 S 0.19 U 3.93 P 99% M 616568 F 0 R 179447 W 0 c 53 w 3 I 184 O 152 L 1.11 1.11 1.12 @#@FSLOADPOST 2025:02:18:11:55:38 mri_label2label N 12 1.18 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 249 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2568 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:38 mri_label2label N 12 e 4.15 S 0.21 U 3.92 P 99% M 616680 F 0 R 175267 W 0 c 25 w 2 I 208 O 192 L 1.18 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:55:42 mri_label2label N 12 1.17 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 126 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1675 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:42 mri_label2label N 12 e 4.17 S 0.23 U 3.93 P 99% M 616520 F 0 R 171041 W 0 c 17 w 3 I 144 O 128 L 1.17 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:55:46 mri_label2label N 12 1.17 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 1956 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 8991 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:46 mri_label2label N 12 e 5.09 S 0.19 U 4.88 P 99% M 616872 F 0 R 179550 W 0 c 15 w 4 I 616 O 712 L 1.17 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:55:51 mri_label2label N 12 1.15 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 409 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 2321 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:51 mri_label2label N 12 e 4.28 S 0.22 U 4.03 P 99% M 616668 F 0 R 175261 W 0 c 17 w 2 I 168 O 184 L 1.15 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:55:56 mri_label2label N 12 1.22 1.14 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 766 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1917 mri_label2label: Done @#@FSTIME 2025:02:18:11:55:56 mri_label2label N 12 e 3.97 S 0.22 U 3.74 P 99% M 616308 F 0 R 175252 W 0 c 17 w 3 I 104 O 168 L 1.22 1.14 1.12 @#@FSLOADPOST 2025:02:18:11:56:00 mri_label2label N 12 1.20 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 805 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 4210 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:00 mri_label2label N 12 e 4.63 S 0.22 U 4.39 P 99% M 616756 F 0 R 175296 W 0 c 33 w 2 I 304 O 336 L 1.20 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:56:04 mri_label2label N 12 1.19 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 1023 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4357 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:04 mri_label2label N 12 e 4.70 S 0.19 U 4.46 P 99% M 616720 F 0 R 175291 W 0 c 13 w 2 I 296 O 360 L 1.19 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:56:09 mri_label2label N 12 1.17 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 155 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 668 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:09 mri_label2label N 12 e 3.86 S 0.19 U 3.66 P 99% M 616492 F 0 R 175238 W 0 c 252 w 2 I 48 O 64 L 1.17 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:56:13 mri_label2label N 12 1.16 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 503 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:13 mri_label2label N 12 e 3.94 S 0.24 U 3.70 P 99% M 616492 F 0 R 175236 W 0 c 13 w 3 I 48 O 40 L 1.16 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:56:17 mri_label2label N 12 1.14 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 163004 Number of reverse mapping hits = 25 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 475 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:17 mri_label2label N 12 e 3.86 S 0.17 U 3.69 P 99% M 616620 F 0 R 175235 W 0 c 30 w 2 I 48 O 40 L 1.14 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:56:21 mri_label2label N 12 1.14 1.12 1.12 mris_label2annot --s sub-M137 --hemi lh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /home/tonglab/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --hemi lh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi lh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.orig Index Offset 0 0 reading lh.BA1_exvivo.label 1 1530880 BA1_exvivo 1 reading lh.BA2_exvivo.label 2 16749699 BA2_exvivo 2 reading lh.BA3a_exvivo.label 3 16711680 BA3a_exvivo 3 reading lh.BA3b_exvivo.label 4 3368703 BA3b_exvivo 4 reading lh.BA4a_exvivo.label 5 1376196 BA4a_exvivo 5 reading lh.BA4p_exvivo.label 6 13382655 BA4p_exvivo 6 reading lh.BA6_exvivo.label 7 10036737 BA6_exvivo 7 reading lh.BA44_exvivo.label 8 2490521 BA44_exvivo 8 reading lh.BA45_exvivo.label 9 39283 BA45_exvivo 9 reading lh.V1_exvivo.label 10 3993 V1_exvivo 10 reading lh.V2_exvivo.label 11 8508928 V2_exvivo 11 reading lh.MT_exvivo.label 12 10027163 MT_exvivo 12 reading lh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo 13 reading lh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 112105 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.BA_exvivo.annot @#@FSTIME 2025:02:18:11:56:21 mris_label2annot N 38 e 0.69 S 0.05 U 0.61 P 97% M 188380 F 0 R 51979 W 0 c 4 w 2 I 8 O 2552 L 1.14 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:56:22 mris_label2annot N 38 1.13 1.12 1.12 mris_label2annot --s sub-M137 --hemi lh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /home/tonglab/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --hemi lh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi lh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.orig Index Offset 0 0 reading lh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo 1 reading lh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo 2 reading lh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo 3 reading lh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo 4 reading lh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo 5 reading lh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo 6 reading lh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo 7 reading lh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo 8 reading lh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo 9 reading lh.V1_exvivo.thresh.label 10 3993 V1_exvivo 10 reading lh.V2_exvivo.thresh.label 11 8508928 V2_exvivo 11 reading lh.MT_exvivo.thresh.label 12 10027163 MT_exvivo 12 reading lh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo 13 reading lh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 132739 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/lh.BA_exvivo.thresh.annot @#@FSTIME 2025:02:18:11:56:22 mris_label2annot N 38 e 0.63 S 0.05 U 0.58 P 99% M 187996 F 0 R 51879 W 0 c 3 w 1 I 0 O 2552 L 1.13 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:56:22 mris_label2annot N 38 1.13 1.12 1.12 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-M137 lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1390 834 1908 1.894 0.435 0.123 0.034 15 1.8 BA1_exvivo 4573 2930 6426 2.103 0.446 0.098 0.020 34 3.6 BA2_exvivo 1152 797 1172 1.819 0.404 0.119 0.027 7 1.3 BA3a_exvivo 2776 1820 3604 1.818 0.491 0.101 0.018 19 2.2 BA3b_exvivo 2092 1182 3406 2.568 0.561 0.102 0.026 14 2.4 BA4a_exvivo 1750 1097 2871 2.646 0.444 0.092 0.019 9 1.4 BA4p_exvivo 14300 8559 23794 2.482 0.584 0.105 0.028 137 15.7 BA6_exvivo 3193 2256 5267 2.116 0.440 0.111 0.022 29 3.0 BA44_exvivo 4121 3020 7121 2.056 0.458 0.125 0.025 52 4.2 BA45_exvivo 3565 2415 4274 1.759 0.516 0.121 0.031 36 4.4 V1_exvivo 8132 5632 10982 1.886 0.611 0.145 0.037 117 13.0 V2_exvivo 2387 1602 3526 2.149 0.461 0.116 0.024 23 2.3 MT_exvivo 794 512 927 1.606 0.647 0.116 0.042 9 1.4 perirhinal_exvivo 674 449 1630 2.543 1.220 0.114 0.035 6 0.8 entorhinal_exvivo @#@FSTIME 2025:02:18:11:56:22 mris_anatomical_stats N 12 e 4.04 S 0.21 U 3.83 P 99% M 566372 F 0 R 160050 W 0 c 21 w 1 I 0 O 32 L 1.13 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:56:26 mris_anatomical_stats N 12 1.13 1.12 1.12 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-M137 lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 249156 Total vertex volume 248930 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 908 519 1275 1.922 0.365 0.119 0.036 10 1.2 BA1_exvivo 1968 1236 2810 2.120 0.438 0.099 0.022 15 1.7 BA2_exvivo 1007 693 974 1.792 0.398 0.116 0.027 6 1.2 BA3a_exvivo 1717 1145 1840 1.609 0.304 0.093 0.015 9 1.2 BA3b_exvivo 2095 1244 3520 2.624 0.518 0.096 0.024 12 2.1 BA4a_exvivo 1369 860 2191 2.638 0.477 0.098 0.019 7 1.2 BA4p_exvivo 8062 4653 13321 2.510 0.602 0.102 0.027 79 8.8 BA6_exvivo 2067 1493 3501 2.122 0.423 0.120 0.023 22 2.2 BA44_exvivo 1897 1373 3283 2.085 0.469 0.120 0.024 23 1.7 BA45_exvivo 3784 2577 4578 1.753 0.530 0.122 0.032 39 4.9 V1_exvivo 4029 2963 5357 1.772 0.574 0.160 0.041 65 7.6 V2_exvivo 643 441 785 1.911 0.366 0.136 0.030 7 0.9 MT_exvivo 303 209 339 1.748 0.358 0.107 0.031 2 0.4 perirhinal_exvivo 416 273 1112 2.853 0.774 0.093 0.019 2 0.3 entorhinal_exvivo @#@FSTIME 2025:02:18:11:56:26 mris_anatomical_stats N 12 e 4.23 S 0.19 U 4.02 P 99% M 566676 F 0 R 155863 W 0 c 21 w 1 I 0 O 32 L 1.13 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:56:31 mris_anatomical_stats N 12 1.28 1.15 1.13 #-------------------------------------------- #@# BA_exvivo Labels rh Tue Feb 18 11:56:31 CST 2025 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 528 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4490 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:31 mri_label2label N 12 e 4.80 S 0.23 U 4.53 P 99% M 630604 F 0 R 182935 W 0 c 8 w 7 I 16160 O 336 L 1.28 1.15 1.13 @#@FSLOADPOST 2025:02:18:11:56:35 mri_label2label N 12 1.42 1.18 1.14 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 628 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 7315 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:35 mri_label2label N 12 e 5.23 S 0.21 U 5.00 P 99% M 630824 F 0 R 182982 W 0 c 137 w 2 I 520 O 520 L 1.42 1.18 1.14 @#@FSLOADPOST 2025:02:18:11:56:41 mri_label2label N 12 1.39 1.18 1.14 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 153 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4133 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:41 mri_label2label N 12 e 4.83 S 0.27 U 4.54 P 99% M 630600 F 0 R 182931 W 0 c 20 w 2 I 312 O 264 L 1.39 1.18 1.14 @#@FSLOADPOST 2025:02:18:11:56:45 mri_label2label N 12 1.36 1.18 1.14 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 393 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4915 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:45 mri_label2label N 12 e 4.86 S 0.20 U 4.65 P 99% M 630524 F 0 R 182941 W 0 c 13 w 2 I 352 O 344 L 1.36 1.18 1.14 @#@FSLOADPOST 2025:02:18:11:56:50 mri_label2label N 12 1.33 1.17 1.14 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 842 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 6589 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:50 mri_label2label N 12 e 5.13 S 0.23 U 4.89 P 99% M 630664 F 0 R 182969 W 0 c 28 w 2 I 440 O 472 L 1.33 1.17 1.14 @#@FSLOADPOST 2025:02:18:11:56:55 mri_label2label N 12 1.30 1.17 1.14 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 304 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4777 mri_label2label: Done @#@FSTIME 2025:02:18:11:56:55 mri_label2label N 12 e 4.84 S 0.23 U 4.60 P 99% M 630580 F 0 R 182940 W 0 c 23 w 2 I 344 O 312 L 1.30 1.17 1.14 @#@FSLOADPOST 2025:02:18:11:57:00 mri_label2label N 12 1.28 1.17 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 3147 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 15403 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:00 mri_label2label N 12 e 6.62 S 0.20 U 6.39 P 99% M 631020 F 0 R 183100 W 0 c 27 w 2 I 936 O 1176 L 1.28 1.17 1.13 @#@FSLOADPOST 2025:02:18:11:57:07 mri_label2label N 12 1.23 1.16 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1451 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 8363 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:07 mri_label2label N 12 e 5.21 S 0.23 U 4.95 P 99% M 630708 F 0 R 182996 W 0 c 25 w 3 I 528 O 640 L 1.23 1.16 1.13 @#@FSLOADPOST 2025:02:18:11:57:12 mri_label2label N 12 1.21 1.16 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-M137 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1069 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 6424 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:12 mri_label2label N 12 e 5.06 S 0.22 U 4.80 P 99% M 630656 F 0 R 182963 W 0 c 42 w 4 I 416 O 496 L 1.21 1.16 1.13 @#@FSLOADPOST 2025:02:18:11:57:17 mri_label2label N 12 1.20 1.16 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-M137 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1588 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 6315 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:17 mri_label2label N 12 e 4.93 S 0.20 U 4.69 P 99% M 630624 F 0 R 182955 W 0 c 23 w 4 I 376 O 520 L 1.20 1.16 1.13 @#@FSLOADPOST 2025:02:18:11:57:22 mri_label2label N 12 1.18 1.15 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-M137 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 2765 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 10781 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:22 mri_label2label N 12 e 5.87 S 0.25 U 5.61 P 99% M 630868 F 0 R 183025 W 0 c 37 w 3 I 640 O 872 L 1.18 1.15 1.13 @#@FSLOADPOST 2025:02:18:11:57:28 mri_label2label N 12 1.17 1.15 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-M137 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1361 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 3293 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:28 mri_label2label N 12 e 4.39 S 0.22 U 4.15 P 99% M 630512 F 0 R 174353 W 0 c 15 w 2 I 160 O 288 L 1.17 1.15 1.13 @#@FSLOADPOST 2025:02:18:11:57:33 mri_label2label N 12 1.15 1.15 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-M137 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 83 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1121 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:33 mri_label2label N 12 e 4.11 S 0.18 U 3.92 P 99% M 630408 F 0 R 178523 W 0 c 13 w 2 I 96 O 80 L 1.15 1.15 1.13 @#@FSLOADPOST 2025:02:18:11:57:37 mri_label2label N 12 1.14 1.14 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-M137 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 802 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:37 mri_label2label N 12 e 3.98 S 0.18 U 3.79 P 99% M 630136 F 0 R 178524 W 0 c 20 w 2 I 72 O 64 L 1.14 1.14 1.13 @#@FSLOADPOST 2025:02:18:11:57:41 mri_label2label N 12 1.14 1.14 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 254 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 795 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:41 mri_label2label N 12 e 4.03 S 0.19 U 3.83 P 99% M 630316 F 0 R 174310 W 0 c 11 w 2 I 56 O 72 L 1.14 1.14 1.13 @#@FSLOADPOST 2025:02:18:11:57:45 mri_label2label N 12 1.13 1.14 1.13 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 317 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 1038 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:45 mri_label2label N 12 e 4.01 S 0.24 U 3.76 P 99% M 630232 F 0 R 178525 W 0 c 16 w 3 I 72 O 96 L 1.13 1.14 1.13 @#@FSLOADPOST 2025:02:18:11:57:49 mri_label2label N 12 1.12 1.14 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 407 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1930 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:49 mri_label2label N 12 e 4.32 S 0.21 U 4.10 P 99% M 630372 F 0 R 178534 W 0 c 19 w 2 I 144 O 168 L 1.12 1.14 1.12 @#@FSLOADPOST 2025:02:18:11:57:53 mri_label2label N 12 1.11 1.14 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 486 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 2072 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:53 mri_label2label N 12 e 4.15 S 0.19 U 3.96 P 99% M 630388 F 0 R 182894 W 0 c 12 w 3 I 152 O 176 L 1.11 1.14 1.12 @#@FSLOADPOST 2025:02:18:11:57:57 mri_label2label N 12 1.10 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1149 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4816 mri_label2label: Done @#@FSTIME 2025:02:18:11:57:57 mri_label2label N 12 e 4.64 S 0.23 U 4.39 P 99% M 630452 F 0 R 178588 W 0 c 21 w 2 I 328 O 392 L 1.10 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:02 mri_label2label N 12 1.09 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1043 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3762 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:02 mri_label2label N 12 e 4.52 S 0.20 U 4.30 P 99% M 630384 F 0 R 174360 W 0 c 10 w 2 I 248 O 312 L 1.09 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:06 mri_label2label N 12 1.09 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 488 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1716 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:06 mri_label2label N 12 e 4.17 S 0.23 U 3.93 P 99% M 630364 F 0 R 178536 W 0 c 12 w 3 I 112 O 152 L 1.09 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:11 mri_label2label N 12 1.08 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-M137 --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 454 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1479 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:11 mri_label2label N 12 e 4.06 S 0.18 U 3.88 P 99% M 630368 F 0 R 182881 W 0 c 18 w 2 I 96 O 128 L 1.08 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:15 mri_label2label N 12 1.08 1.13 1.12 mris_label2annot --s sub-M137 --ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt Number of ctab entries 9 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --ctab /home/tonglab/freesurfer/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi rh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.orig Index Offset 0 0 reading rh.FG1.mpm.vpnl.label 1 1376057 FG1 1 reading rh.FG2.mpm.vpnl.label 2 16711935 FG2 2 reading rh.FG3.mpm.vpnl.label 3 16711680 FG3 3 reading rh.FG4.mpm.vpnl.label 4 1705837 FG4 4 reading rh.hOc1.mpm.vpnl.label 5 25600 hOc1 5 reading rh.hOc2.mpm.vpnl.label 6 255 hOc2 6 reading rh.hOc3v.mpm.vpnl.label 7 16776960 hOc3v 7 reading rh.hOc4v.mpm.vpnl.label 8 65535 hOc4v Mapping unhit to unknown Found 152495 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.mpm.vpnl.annot @#@FSTIME 2025:02:18:11:58:15 mris_label2annot N 26 e 0.65 S 0.08 U 0.57 P 99% M 194520 F 0 R 52860 W 0 c 3 w 1 I 0 O 2648 L 1.08 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:15 mris_label2annot N 26 1.08 1.13 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 237 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 1113 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:15 mri_label2label N 12 e 4.02 S 0.19 U 3.82 P 99% M 630228 F 0 R 178522 W 0 c 27 w 2 I 80 O 96 L 1.08 1.13 1.12 @#@FSLOADPOST 2025:02:18:11:58:19 mri_label2label N 12 1.07 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 175 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2863 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:19 mri_label2label N 12 e 4.57 S 0.22 U 4.33 P 99% M 630384 F 0 R 182910 W 0 c 14 w 3 I 240 O 208 L 1.07 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:58:24 mri_label2label N 12 1.06 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 41 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1739 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:24 mri_label2label N 12 e 4.45 S 0.21 U 4.23 P 99% M 630384 F 0 R 178545 W 0 c 22 w 2 I 152 O 112 L 1.06 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:58:28 mri_label2label N 12 1.06 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 139 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2322 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:28 mri_label2label N 12 e 4.39 S 0.21 U 4.17 P 99% M 630400 F 0 R 178546 W 0 c 24 w 2 I 192 O 168 L 1.06 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:58:33 mri_label2label N 12 1.05 1.12 1.12 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 184 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1572 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:33 mri_label2label N 12 e 4.14 S 0.22 U 3.91 P 99% M 630368 F 0 R 178535 W 0 c 28 w 3 I 120 O 112 L 1.05 1.12 1.12 @#@FSLOADPOST 2025:02:18:11:58:37 mri_label2label N 12 1.05 1.12 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 106 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1595 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:37 mri_label2label N 12 e 4.19 S 0.21 U 3.97 P 99% M 630512 F 0 R 182888 W 0 c 15 w 3 I 136 O 112 L 1.05 1.12 1.11 @#@FSLOADPOST 2025:02:18:11:58:41 mri_label2label N 12 1.05 1.12 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1725 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 8684 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:41 mri_label2label N 12 e 5.25 S 0.20 U 5.03 P 99% M 630824 F 0 R 178648 W 0 c 29 w 3 I 592 O 664 L 1.05 1.12 1.11 @#@FSLOADPOST 2025:02:18:11:58:47 mri_label2label N 12 1.05 1.11 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 232 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1244 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:47 mri_label2label N 12 e 4.06 S 0.21 U 3.84 P 99% M 630364 F 0 R 178671 W 0 c 12 w 3 I 88 O 104 L 1.05 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:58:51 mri_label2label N 12 1.04 1.11 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 207 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1385 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:51 mri_label2label N 12 e 4.17 S 0.22 U 3.95 P 99% M 630248 F 0 R 178527 W 0 c 11 w 3 I 104 O 112 L 1.04 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:58:55 mri_label2label N 12 1.04 1.11 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1016 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 4248 mri_label2label: Done @#@FSTIME 2025:02:18:11:58:55 mri_label2label N 12 e 4.77 S 0.19 U 4.56 P 99% M 630512 F 0 R 178571 W 0 c 24 w 3 I 280 O 352 L 1.04 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:59:00 mri_label2label N 12 1.03 1.11 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 1261 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4698 mri_label2label: Done @#@FSTIME 2025:02:18:11:59:00 mri_label2label N 12 e 4.80 S 0.20 U 4.58 P 99% M 630568 F 0 R 178573 W 0 c 11 w 3 I 296 O 392 L 1.03 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:59:04 mri_label2label N 12 1.03 1.11 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 237 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 505 mri_label2label: Done @#@FSTIME 2025:02:18:11:59:04 mri_label2label N 12 e 3.92 S 0.22 U 3.70 P 99% M 630200 F 0 R 178511 W 0 c 16 w 2 I 24 O 48 L 1.03 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:59:08 mri_label2label N 12 1.03 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 48 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 742 mri_label2label: Done @#@FSTIME 2025:02:18:11:59:08 mri_label2label N 12 e 3.99 S 0.20 U 3.79 P 99% M 630488 F 0 R 182872 W 0 c 17 w 2 I 64 O 56 L 1.03 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:59:12 mri_label2label N 12 1.03 1.10 1.11 mri_label2label --srcsubject fsaverage --srclabel /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-M137 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-M137 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer FREESURFER_HOME /home/tonglab/freesurfer Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white Reading target registration /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 169259 Number of reverse mapping hits = 22 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 313 mri_label2label: Done @#@FSTIME 2025:02:18:11:59:12 mri_label2label N 12 e 3.99 S 0.24 U 3.74 P 99% M 630216 F 0 R 182864 W 0 c 14 w 2 I 32 O 24 L 1.03 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:59:16 mri_label2label N 12 1.03 1.10 1.11 mris_label2annot --s sub-M137 --hemi rh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /home/tonglab/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --hemi rh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi rh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.orig Index Offset 0 0 reading rh.BA1_exvivo.label 1 1530880 BA1_exvivo 1 reading rh.BA2_exvivo.label 2 16749699 BA2_exvivo 2 reading rh.BA3a_exvivo.label 3 16711680 BA3a_exvivo 3 reading rh.BA3b_exvivo.label 4 3368703 BA3b_exvivo 4 reading rh.BA4a_exvivo.label 5 1376196 BA4a_exvivo 5 reading rh.BA4p_exvivo.label 6 13382655 BA4p_exvivo 6 reading rh.BA6_exvivo.label 7 10036737 BA6_exvivo 7 reading rh.BA44_exvivo.label 8 2490521 BA44_exvivo 8 reading rh.BA45_exvivo.label 9 39283 BA45_exvivo 9 reading rh.V1_exvivo.label 10 3993 V1_exvivo 10 reading rh.V2_exvivo.label 11 8508928 V2_exvivo 11 reading rh.MT_exvivo.label 12 10027163 MT_exvivo 12 reading rh.perirhinal_exvivo.label 13 16422433 perirhinal_exvivo 13 reading rh.entorhinal_exvivo.label 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 117719 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.BA_exvivo.annot @#@FSTIME 2025:02:18:11:59:16 mris_label2annot N 38 e 0.70 S 0.07 U 0.62 P 99% M 195300 F 0 R 53015 W 0 c 3 w 1 I 0 O 2648 L 1.03 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:59:17 mris_label2annot N 38 1.02 1.10 1.11 mris_label2annot --s sub-M137 --hemi rh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /home/tonglab/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.4.1 cwd /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label cmdline mris_label2annot --s sub-M137 --hemi rh --ctab /home/tonglab/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname leia machine x86_64 user tonglab subject sub-M137 hemi rh SUBJECTS_DIR /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer ColorTable /home/tonglab/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.orig Index Offset 0 0 reading rh.BA1_exvivo.thresh.label 1 1530880 BA1_exvivo 1 reading rh.BA2_exvivo.thresh.label 2 16749699 BA2_exvivo 2 reading rh.BA3a_exvivo.thresh.label 3 16711680 BA3a_exvivo 3 reading rh.BA3b_exvivo.thresh.label 4 3368703 BA3b_exvivo 4 reading rh.BA4a_exvivo.thresh.label 5 1376196 BA4a_exvivo 5 reading rh.BA4p_exvivo.thresh.label 6 13382655 BA4p_exvivo 6 reading rh.BA6_exvivo.thresh.label 7 10036737 BA6_exvivo 7 reading rh.BA44_exvivo.thresh.label 8 2490521 BA44_exvivo 8 reading rh.BA45_exvivo.thresh.label 9 39283 BA45_exvivo 9 reading rh.V1_exvivo.thresh.label 10 3993 V1_exvivo 10 reading rh.V2_exvivo.thresh.label 11 8508928 V2_exvivo 11 reading rh.MT_exvivo.thresh.label 12 10027163 MT_exvivo 12 reading rh.perirhinal_exvivo.thresh.label 13 16422433 perirhinal_exvivo 13 reading rh.entorhinal_exvivo.thresh.label 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 140570 unhit vertices Writing annot to /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/label/rh.BA_exvivo.thresh.annot @#@FSTIME 2025:02:18:11:59:17 mris_label2annot N 38 e 0.67 S 0.08 U 0.59 P 100% M 194912 F 0 R 52937 W 0 c 4 w 1 I 0 O 2648 L 1.02 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:59:18 mris_label2annot N 38 1.02 1.10 1.11 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-M137 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1429 748 1793 1.875 0.473 0.108 0.029 14 1.7 BA1_exvivo 4029 2583 5144 2.006 0.442 0.089 0.016 21 2.7 BA2_exvivo 1285 866 1222 1.776 0.473 0.114 0.025 8 1.5 BA3a_exvivo 2465 1563 2771 1.698 0.454 0.087 0.018 17 1.6 BA3b_exvivo 2113 1201 3610 2.656 0.529 0.091 0.023 14 2.0 BA4a_exvivo 1528 985 2317 2.402 0.512 0.097 0.021 8 1.3 BA4p_exvivo 12250 7305 20493 2.545 0.575 0.106 0.027 106 14.1 BA6_exvivo 4850 3325 8897 2.514 0.525 0.115 0.022 43 4.4 BA44_exvivo 4646 3296 8159 2.165 0.514 0.130 0.030 58 5.7 BA45_exvivo 4145 2940 6102 1.943 0.600 0.126 0.029 42 5.1 V1_exvivo 8514 5789 10965 1.823 0.582 0.145 0.036 120 13.4 V2_exvivo 3251 2188 3935 1.849 0.502 0.131 0.029 32 4.4 MT_exvivo 393 307 1131 3.053 0.717 0.119 0.032 4 0.5 perirhinal_exvivo 642 448 1975 3.123 0.829 0.129 0.031 8 0.7 entorhinal_exvivo @#@FSTIME 2025:02:18:11:59:18 mris_anatomical_stats N 12 e 4.04 S 0.22 U 3.82 P 99% M 587328 F 0 R 165972 W 0 c 19 w 1 I 0 O 32 L 1.02 1.10 1.11 @#@FSLOADPOST 2025:02:18:11:59:22 mris_anatomical_stats N 12 1.10 1.11 1.11 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-M137 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/mri/wm.mgz... reading input surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... reading input pial surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.pial... reading input white surface /media/tonglab/Drive_2/irem/FigGround_Tuning_LateralFig/derivatives/fmriprep/sourcedata/freesurfer/sub-M137/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 262538 Total vertex volume 262292 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1750485 mm^3 (det: 1.112895 ) 1030 511 1162 1.782 0.416 0.101 0.030 11 1.1 BA1_exvivo 2337 1500 3175 2.032 0.458 0.088 0.015 13 1.6 BA2_exvivo 1161 790 1059 1.759 0.443 0.116 0.027 7 1.4 BA3a_exvivo 1926 1260 1972 1.604 0.339 0.080 0.014 9 1.1 BA3b_exvivo 1271 678 2078 2.709 0.545 0.090 0.025 10 1.2 BA4a_exvivo 1261 826 1868 2.362 0.520 0.096 0.019 6 1.0 BA4p_exvivo 7736 4537 13100 2.555 0.578 0.102 0.026 65 8.3 BA6_exvivo 1159 810 2366 2.606 0.521 0.119 0.025 11 1.2 BA44_exvivo 1230 887 2658 2.458 0.448 0.134 0.031 17 1.4 BA45_exvivo 3968 2804 5811 1.960 0.588 0.123 0.028 39 4.6 V1_exvivo 4455 3083 6027 1.811 0.571 0.150 0.037 66 7.3 V2_exvivo 505 316 673 1.868 0.450 0.125 0.029 5 0.6 MT_exvivo 32 20 95 3.405 0.478 0.151 0.052 1 0.1 perirhinal_exvivo 618 445 1709 3.142 0.660 0.114 0.022 4 0.6 entorhinal_exvivo @#@FSTIME 2025:02:18:11:59:22 mris_anatomical_stats N 12 e 4.07 S 0.21 U 3.85 P 99% M 587100 F 0 R 165966 W 0 c 20 w 1 I 0 O 32 L 1.10 1.11 1.11 @#@FSLOADPOST 2025:02:18:11:59:26 mris_anatomical_stats N 12 1.10 1.11 1.11 Started at Tue Feb 18 10:30:43 CST 2025 Ended at Tue Feb 18 11:59:26 CST 2025 #@#%# recon-all-run-time-hours 1.479 recon-all -s sub-M137 finished without error at Tue Feb 18 11:59:26 CST 2025