Hi Bernd, which version of FS are you using? make_average_subject did not always produce a tif file, but the FS 5.1 version should have. If not, you can use mris_make_template (this is what is called inside of make_average_subject).
doug

On 10/29/12 2:14 AM, Bernd Merkel wrote:

Dear all,

just having started using Freesurfer, I have the following question
which has also been touched by other people but I couldn't find a
solution for my problem.

I have about 100 subjects from which I want to create my own template
to be used by Freesurfer.
These have been my steps:

1. recon-all (on all my subjects)

2. make_average_subject --subjects (list of all subjects)

3. I wanted to use the code provided on the Wiki:
for subject in 'subjectList.txt';
do
cd $SUBJECTS_DIR/subject
mris_register -curv surf/lh.sphere
$SUBJECTS_DIR/newtemplate/lh.
reg.template.tif
surf/lh.sphere.reg.newtemplate
end

The first two steps went fine. But I do not know how to handle that
template.tif-File, because that hasn't been created as a result during
my second step. Have I missed something ?
Furthermore there is this other command

mris_make_template

but I do not know whether (and where in my processing) I should use
that (perhaps instead of make_average_subject) ?
Thanks for any help,
Bernd
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer