Hi Dorsa

why do you think it  is going out too far? What intensity volume are you
overlaying it on? Many segmentations miss the lateral parts of the
thalamus since they have so much myelin in them

cheers
Bruce

On Wed, 19 Oct 2016, Dorsa
Haji Ghaffari wrote:

> Hi,
> I have done the sub-cortical segmentation in Freesurfer and have extracted the left thalamus, when I put
> it on top of the original MRI, it seems like it is getting out of the border of thalamus, also it is not
> smooth. I wanted to ask if anyone knows how to limit the computation only to thalamus, and also make it
> trace the thalamus more accurately?
>
> Thank you
>
> Dorsa
>
>

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