Hi everyone,
I run into an error when I try to do the tutorial on ROI group analysis. I downloaded the tutorial set, but did not put it into FREESURFER_HOME/subjects, because my computer doesn't allow it. I made my own folder and copied everything in there. The error arises when I try to map a label from the fsaverage subject to a target subject:
mri_label2label \
> --srcsubject fsaverage \
> --srclabel fsaverage/label/lh.BA45.label \
> --trgsubject 004 \
> --trglabel 004/label/lh.BA45.label \
> --hemi lh \
> --regmethod surface
srclabel = fsaverage/label/lh.BA45.label
srcsubject = fsaverage
trgsubject = 004
trglabel = 004/label/lh.BA45.label
regmethod = surface
srchemi = lh
trghemi = lh
trgsurface = white
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs = 0, 0
Use ProjFrac = 0, 0
DoPaint 0
SUBJECTS_DIR Desktop/anita-vumc/anitapddatabase-freesurfer/buckner_data/tutorial_subjs/group_analysis_tutorial
FREESURFER_HOME /usr/local/freesurfer
Loading source label.
Found 3422 points in source label.
Starting surface-based mapping
Reading source registration
Desktop/anita-vumc/anitapddatabase-freesurfer/buckner_data/tutorial_subjs/group_analysis_tutorial/fsaverage/surf/lh.sphere.reg
MRISread(Desktop/anita-vumc/anitapddatabase-freesurfer/buckner_data/tutorial_subjs/group_analysis_tutorial/fsaverage/surf/lh.sphere.reg): could not open file
No such file or directory
ERROR: could not read Desktop/anita-vumc/anitapddatabase-freesurfer/buckner_data/tutorial_subjs/group_analysis_tutorial/fsaverage/surf/lh.sphere.reg
In related posts I read that it might have to do with the creation of symbolic links. I made sure that in my SUBJECTS_DIR, fsaverage is a symbolic link to my FREESURFER_HOME/subjects directory, in which surf/lh.sphere.reg etc are stored. What am I doing wrong? Does it still have to do with the fact that I put the tutorial data in another folder?
Hope you can help me,
Thanks in advance,
Anita