External Email - Use Caution        

Hi Falk,

 

Thank you for the response!

I have given your suggestion a try and I am still getting the following error:

 

free(): double free detected in tcache 2

Command terminated by signal 6

 

Best,

Nathan

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of falk.luesebrink@med.ovgu.de <falk.luesebrink@med.ovgu.de>
Date: Wednesday, 19 January 2022 at 12:52
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Using SPM segmentations in FreeSurfer

⚠ External sender. Take care when opening links or attachments. Do not provide your login details.

        External Email - Use Caution

Hi Nathan,


are you sure that the SPM segmentation and the wm.mgz share the same space? You could try e.g. mri_convert -rl wm.mgz your_spm_segmentation.nii spm_wm.mgz


Best,

Falk

________________________________
Von: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> im Auftrag von Nathan Kindred (PGR) <N.Kindred1@newcastle.ac.uk>
Gesendet: Mittwoch, 19. Januar 2022 13:29:46
An: freesurfer@nmr.mgh.harvard.edu
Betreff: [Freesurfer] Using SPM segmentations in FreeSurfer


        External Email - Use Caution
Hi,

I have been trying to incorporate segmentation files from SPM into FreeSurfer to improve the surfaces, but I am not sure if I am going about it in the right way. I have been replacing the wm.mgz file with a file from SPM and then running ‘recon-all -s ${subject} -autorecon2-wm -autorecon3’, but I keep getting errors. I have tried using both conform and conform_min as part of mri_convert when replacing the wm.mgz file with an SPM file but in both cases I still get errors.

Are there other steps I should be taking or a different line of code I should run to get this to work?

Thanks,
Nathan


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&amp;data=04%7C01%7Cn.kindred1%40newcastle.ac.uk%7Cf53b338b194a4f634fa408d9db4a8342%7C9c5012c9b61644c2a91766814fbe3e87%7C1%7C0%7C637781935340044379%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&amp;sdata=QoKAAdwJTjthPD0gPZPmt0owIasgazNfdz6hI9CYRK0%3D&amp;reserved=0