I am using Ubuntu 23.1 with freesurfer 7.4.1 to run the recon-all command and the command runs without error and I do get a set of directories including: label, mri, scripts, stats, surf, tmp, touch, and trash. However, the only folders that are not empty are scripts where there are 11 files and  a 001.mgz file in the mri/orig directory.

I am not sure what I am doing incorrectly and was hoping for some guidance with this.

Thank you!