Dear Freesurfers,

I ran recon-all on a subject with extreme hydrocephalus. Registration to Talairach space and skull stripping were OK. However, a part of occipital white matter was not recognized as white matter even after adding control points and running recon-all -autorecon2-cp -autorecon3  due to the large ventricle as you can see in the attachment. What can you recommend to  fix this problem?
Thank you for your help!

Andrea


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Dr. Horváth Andrea
PhD hallgató
Pécsi Diagnosztikai Központ