Dear Freesurfers,
I ran
recon-all on a subject with extreme hydrocephalus. Registration to Talairach space and skull stripping were OK. However, a part of occipital white matter was not recognized as white matter even after adding control points and running
recon-all -autorecon2-cp -autorecon3 due to the large ventricle as you can see in the attachment. What can you recommend to fix this problem?