Dear Bruce,

thank you for your fast reply ,I think I could not explain the problem correctly . I want the number of slices in aseg file convert from 256x256x256 to 208x176x176(the subject size) so I can enable to compute the dice coefficient with my Matlab code ? any suggestions how can I make it possible?

Best Regards,

Nazanin

On Mon, Jan 9, 2017 at 5:51 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Nazanin

all our segmentations are in subject space, so it should be pretty straightforward

cheers
Bruce

On Mon, 9 Jan 2017, N Saf wrote:

Dear freesurfers,

I analysis my T1 MRI with FreeSurfer (aseg.mgz 256x256x256) and I have
manual segmentation for hippocampus in my subject space(208x176x176)as well.
I want to compute the dice coefficient with one simple Matlab code. how can
I do it correctly ?if I want to bring the aseg to subject space , which
command with which options is the best way to do it correctly ?any help can
be appreciated.(I did it for the FSL segmentation result but it was simple
because the result is in my subject space).

Best Regards,
Nazanin

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