Hi all,<br><br>Library issues are all set, I now am having a problem getting freesurfer to recognize .img and .hdr files,<br><br><br><br>[root@ebrcb-dhcp-240-47 freesurfer]# /usr/local/freesurfer/bin/recon-all -autorecon1 -subjid je001_018_4_1-001
<br>INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer<br>Actual FREESURFER_HOME /usr/local/freesurfer<br>-rw-rw-r-- 1 root root 16873 Jul 27 10:16 /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/scripts/recon-
all.log<br>Linux <a href="http://ebrcb-dhcp-240-47.bumc.bu.edu">ebrcb-dhcp-240-47.bumc.bu.edu</a> 2.6.18-8.1.8.el5 #1 SMP Tue Jul 10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux<br>#--------------------------------------------
<br>#@# MotionCor Fri Jul 27 10:17:12 EDT 2007<br>ERROR: no run data found in /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri. Make sure to<br>have a volume called 001.mgz in&nbsp; /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri/orig.
<br>If you have a second run of data call it 002.mgz, etc.<br>See also: <a href="https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion">https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion</a><br>Linux 
<a href="http://ebrcb-dhcp-240-47.bumc.bu.edu">ebrcb-dhcp-240-47.bumc.bu.edu</a> 2.6.18-8.1.8.el5 #1 SMP Tue Jul 10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux<br><br>recon-all exited with ERRORS at Fri Jul 27 10:17:12 EDT 2007
<br><br><br>files are located where freesurfer is looking but isnt finding them, any help would be great, thanks!<br><br><br>Andy<br>