HI,
1-I'm working with FreeSurfer that is on a server.  I don't have permission to create files under the $SUBJECTS_DIR.  Is there any way I can specify -subject to be in a directory for which I do have permission?

for example: recon-all -subject /location of the file or my own subject_dir location -all

2-Also, Is there a way to segment the cortices as a whole, like left and right frontal cx, parietal cx, temporal cx, occipital cx?


Thanks,

AJ