Hi Freesurfer experts, 

I'm hoping you can help me understand how to interpret interactions in clusters identified in whole brain analysis using glmfit and glmfit-sim. Below I describe what I've done and what I'd like to be able to do. Any suggestions would be most appreciated! 

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  • I then ran mri_glmfit-sim to identify clusters that survive multiple comparisons. This revealed 4 clusters (3 in LH; 1 in RH) that represent regions showing significant group x functioning interaction.  
  • I visualized the clusters in tksurfer, and by loading the y.fsgd file was able to visualize the plotted data to get a sense of the interaction, but this is as much as I know in terms of how to examine interactions in the cluster data...... 
My specifc questions include: 
  • I understand that the values in xxx.sig.cluster.mgh overlay reflect log10 p values, the signs of which indicate the direction of the relationship (i.e. -3 = negative correlation between thickness & variable) but I'm not sure how to interpret this in the context of an interaction with group?
  • I understand that the values in xxx.y.ocn.dat contain the average thickness value for each subject in that cluster and that in a simple between groups test this data could be used to conduct post hoc t-tests to show the direction of the difference, but again I'm not sure how to use this data in the context of the interaction. What do the values represent in a group x variable interaction? 
Ideally, I'd like to extract the contrast estimates for each subject in the group x functioning contrast and plot it in another program and conduct pairwise comparisons (t-tests) in order to get a better understanding of the interaction). I'm not sure how to do this - is it possible? My thinking is that I do something similar in fMRI analysis in spm where I can plot the contrasts in a significant cluster and then extract both the average contrast estimates for each group and the contrast estimates for each individual subject. 

Thanks in advance! 

Laura. 


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Laura M. Tully, MA
Social Neuroscience & Psychopathology, Harvard University
Center for the Assessment and Prevention of Prodromal States, UCLA Semel Institute of Neuroscience
ltully@mednet.ucla.edu 
ltully@fas.harvard.edu
310-267-0170
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My musings as a young clinical scientist: http://theclinicalbrain.blogspot.com/
Follow me on Twitter: @tully_laura