what do you get when you run
ls -l /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat

On 2/19/19 8:44 AM, Daniel Davidson Callow wrote:
>
>         External Email - Use Caution
>
> Hello,
>
> I ran a successful dt_recon and then wanted to use
>
> mri_vol2vol --mov $subj_dir/dtrecons/${subj}.${cond}/lowb.nii.gz
> --targ $subj_dir/diffusion_recons/${subj}.${cond}/mri/aparc+aseg.mgz
> --inv --interp nearest --o
> $subj_dir/dtrecons/${subj}.${cond}/aparc+aseg2diff.nii.gz --reg
> $subj_dir/dtrecon/${subj}.${cond}/register.dat --no-save-reg
>
>
> to get the anatomical segmentations into diffusion space. However,
> when running the above code I get the following error message?
>
>
> echo subj =AES139 , cond =Rest
>
> subj =AES139 , cond =Rest
>
> set echo
>
> cd /Volumes/DANIEL/dti_freesurf
>
> mri_vol2vol --mov
> /Volumes/DANIEL/dti_freesurf/dtrecons/AES139.Rest/lowb.nii.gz --targ
> /Volumes/DANIEL/dti_freesurf/diffusion_recons/AES139.Rest/mri/aparc+aseg.mgz
> --inv --interp nearest --o
> /Volumes/DANIEL/dti_freesurf/dtrecons/AES139.Rest/aparc+aseg2diff.nii.gz
> --reg /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat
> --no-save-reg
>
> regio_read_register(): No such file or directory
>
> Could not open
> /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat
>
>
> Matrix from regfile:
>
> MatrixPrint: mat = NULL!
>
> No such file or directory
>
>
> I have attached an example register.dat file in case that is the issue.
>
>
> also the output for ls -l register.dat
>
> -rwxrwxrwx1 administratorstaff323 Feb 18 13:59 register.dat
>
>
> Any advice with troubleshooting is greatly appreciated!
>
>
> Best,
>
> *Daniel Callow*
> /PhD Student, Neuroscience and Cognitive Science/
> Exercise for Brain Health Lab
> University of Maryland, College Park
> dcallow@umd.edu <mailto:dcallow@gmail.com>
> 443-254-6298
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer