from my research assistant -

On XXX the coordinates on the right side of the screen in tkmedit always start with a negative number.

So that part is correct.

Our problem is that the brain is not flipped - if freesurfer displays radiological and SPM8zero displays neurological, then when you compare the 2 side by side, the brains should be mirror images.  Ours are not, they are the same.

Make sense?


On Tue, Sep 20, 2011 at 2:26 PM, Ilana Hairston <hairstonster@gmail.com> wrote:
could you check this?
this a followup on my original email after looking at 110???yl with Barbara and Steve.
thanks
i.

On Tue, Sep 20, 2011 at 2:23 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
What are the talairach coords for the left hemi? The first coordinate (x) should always be negative.
doug

Ilana Hairston wrote:
Hi Doug,
No, we had the lh loaded in tksurfer, and when saving a point it showed up on the _left_ in tkmedit (i.e., the right side).
thanks
ilana


On Tue, Sep 20, 2011 at 11:34 AM, weiland, Barbara <bweiland@med.umich.edu <mailto:bweiland@med.umich.edu>> wrote:


   -----Original Message-----
   From: freesurfer-bounces@nmr.mgh.harvard.edu
   <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>
   [mailto:freesurfer-bounces@nmr.mgh.harvard.edu
   <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>] On Behalf Of
   Douglas N Greve
   Sent: Wednesday, September 14, 2011 6:10 PM
   To: Ilana Hairston
   Cc: freesurfer@nmr.mgh.harvard.edu
   <mailto:freesurfer@nmr.mgh.harvard.edu>

   Subject: Re: [Freesurfer] flipped orientation in tksurfer and tkmedit

   When you say on the "right hemi in tkmedit" do you mean on the
   right side of the image (which is the left side of the brain)?
   doug

   Ilana Hairston wrote:
   > Hi there,
   > We recently had a problem that tksurfer and tkmedit were flipped
   > relative to each other.  Basically, when saving a point in the left
   > hemisphere in tksurfer it it loaded in the right hemisphere in
   tkmedit.
   > Any ideas how this could have happened?
   > Thanks
   > ilana
   >
   >
   >
   > --
   >> ******************************
   >> Ilana Hairston ,PhD
   >> Research Assistant Professor
   >> 4250 Plymouth Rd. (rm 2439)
   >> Psychiatry Department, Addiction Research Center University of
   >> Michigan, Ann Arbor MI 48109-2700
   >> Tel: 734-232-0232 <tel:734-232-0232>; Mobile: 650-906-8449
   <tel:650-906-8449>

   >>
   >> ********************
   >> Reminder: Women do 66% of the work worldwide, earn 10% of the
   income,
   >> and own 1% of the world's property
   >
   >
   >
   >
   ----------------------------------------------------------------------
   > --
   >
   > _______________________________________________
   > Freesurfer mailing list
   > Freesurfer@nmr.mgh.harvard.edu
   <mailto:Freesurfer@nmr.mgh.harvard.edu>

   > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

   --
   Douglas N. Greve, Ph.D.
   MGH-NMR Center
   greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
   Phone Number: 617-724-2358 <tel:617-724-2358>
   Fax: 617-726-7422 <tel:617-726-7422>    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

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--
******************************
Ilana Hairston ,PhD
Research Assistant Professor
4250 Plymouth Rd. (rm 2439)
Psychiatry Department, Addiction Research Center
University of Michigan, Ann Arbor MI 48109-2700
Tel: 734-232-0232; Mobile: 650-906-8449

********************
Reminder: Women do 66% of the work worldwide, earn 10% of the income, and own 1% of the world's property


------------------------------------------------------------------------


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Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer



--
******************************
Ilana Hairston ,PhD
Research Assistant Professor
4250 Plymouth Rd. (rm 2439)
Psychiatry Department, Addiction Research Center
University of Michigan, Ann Arbor MI 48109-2700
Tel: 734-232-0232; Mobile: 650-906-8449

********************
Reminder: Women do 66% of the work worldwide, earn 10% of the income, and own 1% of the world's property





--
******************************
Ilana Hairston ,PhD
Research Assistant Professor
4250 Plymouth Rd. (rm 2439)
Psychiatry Department, Addiction Research Center
University of Michigan, Ann Arbor MI 48109-2700
Tel: 734-232-0232; Mobile: 650-906-8449

********************
Reminder: Women do 66% of the work worldwide, earn 10% of the income, and own 1% of the world's property