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Hmm, it looks like the command `mri_binarize` isn't recognizing the `--noverbose` flag.  I tested this in my env, and I'm not getting that ("ERROR: Option --noverbose unknown") error.

Could it be that $FREESURFER_HOME is pointing to an older version of FreeSurfer?  What does `mri_binarize --version` return?

You can also try running the failed command in isolation:
```
mri_binarize --match 2 41 --count /home/fernanda/Documentos/dHCP/freesurfer1/sub-CC00060XX03/work//sub-CC00060XX03/mri/aseg.count.txt --i /home/fernanda/Documentos/dHCP/freesurfer1/sub-CC00060XX03/work//sub-CC00060XX03/mri/aseg.nii.gz --noverbose
```

-Paul

On Thu, Jul 1, 2021 at 11:41 AM Fernanda Hansen P. de Moraes <fernandahmoraes@gmail.com> wrote:

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Dear FreeSurfer experts,

I am trying to process some newborn subjects including the segfile. In both situations, including the mask file and using the --forceskullstrip flag I get the following error (log file attached):

lta_convert successful.
/home/fernanda/Documentos/dHCP/freesurfer1
ERROR: Option --noverbose unknown

This is the exact command I am running:
infant_recon_all --s sub-CC00060XX03 --age 0 --segfile sub-CC00060XX03/sub-CC00060XX03_ses-12501_desc-drawem87_space-T2w_dseg.nii.gz --forceskulltrip --force

How can I overcome this? Thank you very much.
Fernanda Hansen P. de Moraes

Doutoranda em Ciências Médicas | Instituto D'Or de Pesquisa e Ensino
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