If so, as shown by the screenshot at the bottom of that web page, the freesurfer environment is already setup by default when a new terminal window opens (and in that screenshot is using bash but not csh/tcsh). You should not have to be setting the environment variables by hand as they appear listed at the top of the screenshot of the terminal.

If your $HOME/.bashrc file was edited/changed, or you changed the default shell from bash to csh/tcsh, then it’s possible that setup is no longer working.

If you accepted one of the prompts to *upgrade* the system to a newer version of Ubuntu, then the setup may no longer be working.

For the public VM, this file should list you are running Ubuntu 18.04

$ cat /etc/os-release

If your system was upgraded it will probably say Ubuntu 20.

On Jul 31, 2023, at 16:31, Rachel Wagner <rwagne2@uwo.ca> wrote:

External Email - Use Caution

Hello all,

I’m getting an error as follows:

developer@developer-VirtualBox:~/freesurfer$ setenv SUBJECTS_DIR $FREESURFER_HOME/subjects

Command 'setenv' not found, did you mean:

command 'getenv' from snap getenv (0.3.1)

See 'snap info <snapname>' for additional versions.

developer@developer-VirtualBox:~/freesurfer$

Is something not installed? These functions were working previously.

Thanks,
Rachel
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