On Mon, 2013-02-25 at 17:07 -0500, Daniel Cole wrote:
> Hi Zeke,
> Thank you for the advice. I have Mac OS X Version 10.7.5.
> I checked to see if XQuartz is installed and it is. I reinstalled it
> to be sure but I'm still running into the same problems. Do you (or
> does anyone else) have other ideas about what could be causing this
> issue?
>
> Thanks,
> Daniel
>
>
> On Thu, Feb 21, 2013 at 5:22 PM, <
zkaufman@nmr.mgh.harvard.edu> wrote:
> Daniel,
>
> What operating system are you on? If your using MacOS, you
> must have
> XQuartz installed in order to use the the
> Tkregister2/Tksurfer/Tkmedit
> tools. Check the Application->Utilities folder to see if its
> already
> installed. If not, you can download it from here:
>
>
http://xquartz.macosforge.org/landing/
>
> If your are on Linux than I am sorry but someone else will
> have to chime
> in with a potential solution.
>
> -Zeke
>
>
> > Hello freesurfers,
> > I just ran registration of my functional images and am
> trying to visualize
> > the registration for assessment. However, when I use the
> commands
> > "tkregister-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -fsd
> bold -funcstem
> > f"
> > or
> >
> > "tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID --surf
> --mov
> > $FUNCTIONAL_MRI --reg $REG_DAT --plane sag --movbright
> $MYBRIGHTNESS"
> >
> > the command gets stuck on "Opening window SUBJECT01".
> >
> >
> > I've also tried just opening tksurfer and tkmedit but the
> terminal
> > produces
> > no output/windows opening and simply freezes.
> >
> > Any ideas to why this could be occurring? I've let it sit
> at this stage
> > for multiple hours without anything popping up and without
> any errors.
> >
> >
> > Thanks!
> >
> > Daniel
> >
> >
> > --
> > Daniel Cole
> > University of Rochester
> > Brain and Cognitive Sciences
> >
dcole10@u.rochester.edu
>
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> >
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> --
> Daniel Cole
> University of Rochester
> Brain and Cognitive Sciences
>
dcole10@u.rochester.edu
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