Dear Zheng,

Question 1: In the dev version, all labels are rendered by default. In previous versions: it’s probably best to open the file twice, and render the hippo with the range 200-249 and the amygdala with the range 7000-7020.

Question 2: open  lh.hippoAmygLabels-T1.v2x.mgz instead of  lh.hippoAmygLabels-T1.v2x.FS60.mgz

Cheers,

/Eugenio

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <13181786167@163.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, 1 February 2018 at 07:03
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] dev version

Hi all experts,

  I am using freesurfer dev version for segmentation of hippocampus and amydala. I have a doubt about it.

  1. In FS 6.0, I can type '203-226' in freeview for viewing subfields of hippocampus. In dev version, When I type 'freeview -v nu.mgz -v lh.hippoAmygLabels-T1.v2x.FS60.mgz:colormap=lut', there are subfields of hippocampus and amydala. How can I view them respectively, and get corresponding colors to every subfield?

  2. The hippoSFvolumes.txt shows the volume of body and head of some subfields, such as CA1, CA3. But  When I type 'freeview -v nu.mgz -v lh.hippoAmygLabels-T1.v2x.FS60.mgz:colormap=lut', it seems to serve the body and head as a whole. Is there any way to resolve it?

Sincerely,

Zheng