Hi Saman

Recon-all will give you a comprehensive assessment of most macroscopically visible structures in the brain. You don’t have to convert to nifty first – just point recon-all at a single slice in the proper dicom series (for your 3D T1-weighted scan), and it will spend a few hours doing stuff

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of saman fouladi
Sent: Tuesday, October 20, 2020 4:12 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] please help me

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hi

I want to process MRI images to extract Morphology features.

I convert my dcm file to nii format by mri-convert command and then  I used FSL software and BET(Best extraction Tool).

Next I do not know what to do to extract morphological features?

My other question is what is the difference between recon-all and use FEAT( in FSL software)? What are the uses of each?

Thank you