Hi,

 

I have done tracula tractography on 180 subjects, and most of my isosurfaces look a lot noisier than the example on the wiki. Is there any way to gauge the noisiness of a reconstructed path? And can that information be used for quality control? For instance, here (https://neuro.ebioscience.amc.nl/portal/web/nsg/tracula) they do not accept a somewhat noisy fminor.

 

Another source of information on outliers is the log files that are produced when running -trac-all -stat (based on the shape of the tract). It doesn't seem to flag tracts that are (almost) completely missing (see attached figure, which was not flagged in lh.cab_PP.avg33_mni_bbr.log) - but they may fall under the minimum threshold and therefore not be evaluated?  

Is it recommended to automatically exclude the subjects that are flagged as outliers there?

Thank you!


sincerely yours,

Lars M. Rimol, PhD
Senior researcher,
Norwegian Advisory Unit for functional MRI
Department of Radiology,
St. Olav's University hospital,
7006 Trondheim,
Norway