I’m running a brain surface ROI analysis using data from the HCP. I need to draw those ROIs to be in annot files format so I can use them for further analysis to calculate sulcal depth (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://braininformatics.springeropen.com/articles/10.1186/s40708-019-0098-1).

I draw all my sample (n=40), and to proceed to the next step, I need to measure the LGI in each subject. 

In some samples, I faced a similar error to the one mentioned in this thread: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg09799.html

I tried to run the recon-all lgi again the error remained the same. 

I did as recommended to run the recon-all -s sub -hemi ?h -autorecon2 & 3

The new surfaces were there, and the recon-all lgi worked fine. However, my annot files were not OK with new surfaces, and I don’t know what is exactly the problem, but I will attach an image showing how the labels looked in the original HCP data brain surface and how they look after the recon-all -s sub -hemi ?h -autorecon2 & 3.

I re-downloaded the original surfaces from the HCP database, and it returned to its normal display.

I hope someone can help me to solve the problem, and I appreciate it.

Mudathir