Hi Saad,
Since there is no message indicating it stopped due to error, I would try running it again as it most likely stopped due to the machine it was running on. You can pick up where it left off by doing:
recon-all -make all -s mysubject

On Apr 7, 2011, at 12:25 AM, Saad Ramadan <saad.ramadan@gmail.com> wrote:

Dear all,
 
 
I ran (on an isotropic MPRAGE ):
 
recon-all -subject  mysubject  -i ./DICOM/test.25.1.2010.04.27.21.51.18.31250.14004670.IMA -autorecon-all
 
which ran for few hours and then exited without a successful end as can be seen on log file below.
 
 
Contents of recon-all-status.log are:
 
Wed Apr  6 12:31:55 EDT 2011
#@# MotionCor Wed Apr  6 12:33:10 EDT 2011
#@# Nu Intensity Correction Wed Apr  6 12:33:40 EDT 2011
#@# Talairach Wed Apr  6 12:35:22 EDT 2011
#@# Talairach Failure Detection Wed Apr  6 12:36:53 EDT 2011
#@# Intensity Normalization Wed Apr  6 12:36:53 EDT 2011
#@# Skull Stripping Wed Apr  6 12:41:44 EDT 2011
#@# EM Registration Wed Apr  6 14:16:04 EDT 2011
#@# CA Normalize Wed Apr  6 15:18:54 EDT 2011
#@# CA Reg Wed Apr  6 15:22:59 EDT 2011
 
The last few lines of recon-all.log   produces:

0091: dt=0.112000, rms=0.700 (-0.001%), neg=0, invalid=766
resetting metric properties...
setting smoothness coefficient to 10.00
blurring input image with Gaussian with sigma=2.000...
0000: dt=0.000, rms=0.638, neg=0, invalid=766
0092: dt=0.772947, rms=0.623 (2.335%), neg=0, invalid=766
0093: dt=0.028000, rms=0.622 (0.145%), neg=0, invalid=766
0094: dt=0.028000, rms=0.622 (-0.063%), neg=0, invalid=766
blurring input image with Gaussian with sigma=0.500...
0000: dt=0.000, rms=0.622, neg=0, invalid=766
 
 
Do you have any idea what is going wrong here?
 
Thanks
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