Hello FreeSurfer Developers,
I tried to assemble the data by using mri_preproc, then it shows segmentation fault (core dumped) after running. I searched for the solution, but I couldn't find it.
Here's information
Error : Segmentation fault (core dumped)
Input : FS.txt (FSGD file)
GroupDescriptorFile 1
Title All
Class Male
Class Female
Input 002_S_4213_A Male
Input 002_S_4225_A Male
Input 002_S_4262_A Female
command:
[knho@in-rady-neuro11 test]$ mris_preproc --fsgd FS.txt \ --target fsaverage --hemi lh \ --meas thickness \ --out practice_result.mghnsubjects = 3tmpdir is ./tmp.mris_preproc.2677/localscratch3/testLog file is practice_result.mris_preproc.logWed Jul 13 19:31:44 EDT 2016setenv SUBJECTS_DIR /localscratch3/testcd /localscratch3/test/net/age3/DATA_from_AGE0/FREESURFER/freesurfer51/bin/mris_preproc --fsgd FS.txt --target fsaverage --hemi lh --meas thickness --out practice_result.mghLinux in-rady-neuro11.indyrad.iupui.edu 3.16.2-201.fc20.x86_64 #1 SMP Mon Sep 15 19:57:50 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux$Id: mris_preproc,v 1.59.2.1 2011/05/17 03:42:01 greve Exp $freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0tmpdir is ./tmp.mris_preproc.2677Src lh sphere.regTrg lh sphere.reg---------------------------------------------------#@# 1/3 002_S_4213_A Wed Jul 13 19:31:44 EDT 2016 -------------------------------------mri_surf2surf --srcsubject 002_S_4213_A --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.2677/002_S_4213_A.1.mgh --sval /localscratch3/test/002_S_4213_A/surf/lh.thickness --sfmt curv --noreshape --no-cortexSegmentation fault (core dumped)
I found some advice from online, and it suggested to run recon-all; however it didn't work. I really don't know what is wrong. Can anyone figure out this error?
1) Versioin : FreeSurfer 5.1
2) Platform : Linux