Hi Ali,

 

You are missing the  tcsh interpreter.

It should be located at /bin/tcsh typically.

 

It usually comes with the operating system but may not have been installed or may be in the wrong place for freesurfer to find it.

 

I’ve attached a 64 bit i86 version which is from my installation of Fedora Linus.

 

Regards,

 

Don

 

Don Krieger, Ph.D.

Department of Neurological Surgery

University of Pittsburgh

(412)648-9654 Office

(412)521-4431 Cell/Text

 

From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Ali Radaideh
Sent: Tuesday, August 19, 2014 8:06 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] tkmedit

 

Thanks ZK,

I got the following message:
bash: /usr/local/freesurfer/bin/tkmedit: /bin/tcsh: bad interpreter: No such file or directory

 

On Tue, Aug 12, 2014 at 5:29 PM, Z K <zkaufman@nmr.mgh.harvard.edu> wrote:

Ali,

I have not encountered this issue before. Could you please provide a
screencapture or copy/paste of the terminal output when you type:

$> tkmedit -f $FREESURFER_HOME/subjects/sample-001.mgz

-Zeke




On 08/12/2014 06:48 AM, Ali Radaideh wrote:
> Dear Zeke,
>
> Thanks for your email. For some reasons your email went to the spam folder
>
> The build-stamps.txt file contents:
>
> freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0
>
>  >freeview does not work
>
> Thanks,
> Ali
>
>
>
>
> On Tue, Aug 5, 2014 at 11:44 PM, Z K <zkaufman@nmr.mgh.harvard.edu
> <mailto:zkaufman@nmr.mgh.harvard.edu>> wrote:
>
>     Just so its clear.. You have installed FreeSurfer on 15 Linux machines
>     running Ubuntu? If so, can you please provide me with the contents of
>     the build-stamps.txt file in the FREESURFER_HOME directory?
>
>     Also, could you please inform me if freeview works by simply typing the
>     freeview command?
>
>     $> freeview
>
>     -Zeke
>
>
>     On 08/05/2014 04:32 PM, Ali Radaideh wrote:
>      > Dear FreeSurfer experts,
>      >
>      > I have installed FreeSurfer on multiple machines in our image
>     processing
>      > lab (15 PC, Linux Ubuntu) and made sure that the setting are fine.
>      > However, I have tried to test if freesurfer works or not by
>     typing the
>      > following:
>      >
>      > tkmedit bert orig.mgz
>      >
>      >
>      > Unfortunately, I have got the following error message on all PCs
>      >
>      > A segfault has occurred. This is not your fault,
>      >    : but is most likely an unrecoverable error and has
>      >    : made the program unstable.
>      >
>      >
>      > ​So what would be the error​?
>      >
>      > Many thanks in advance,
>      > Ali,
>      >
>      >
>      > --
>      > /Ali M. Al-Radaideh. PhD
>      > Assistant Professor
>      > Head of Department of Medical Imaging
>      > Vice Dean of the Faculty of Allied Health Sciences
>      > The Hashemite University,
>      > Zarqa, Jordan
>      > W.phone +962 5 3903333 ext.5422, 5355, 5364
>      > Email: ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jo>
>     <mailto:ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jo>>
>      > /
>      > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/
>      >
>      >
>      >
>      > _______________________________________________
>      > Freesurfer mailing list
>      > Freesurfer@nmr.mgh.harvard.edu
>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>      > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>      >
>     _______________________________________________
>     Freesurfer mailing list
>     Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>     The information in this e-mail is intended only for the person to
>     whom it is
>     addressed. If you believe this e-mail was sent to you in error and
>     the e-mail
>     contains patient information, please contact the Partners Compliance
>     HelpLine at
>     http://www.partners.org/complianceline . If the e-mail was sent to
>     you in error
>     but does not contain patient information, please contact the sender
>     and properly
>     dispose of the e-mail.
>
>
>
>
> --
> /Ali M. Al-Radaideh. PhD
> Assistant Professor
> Head of Department of Medical Imaging
> Vice Dean of the Faculty of Allied Health Sciences
> The Hashemite University,
> Zarqa, Jordan
> W.phone +962 5 3903333 ext.5422, 5355, 5364
> Email: ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jo>
> /
> /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--

Ali M. Al-Radaideh. PhD
Assistant Professor
Head of Department of Medical Imaging
Vice Dean of the Faculty of Allied Health Sciences
The Hashemite University, 
Zarqa, Jordan
W.phone +962 5 3903333 ext.5422, 5355, 5364
Email: ali.radaideh@hu.edu.jo

webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=

 

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.