did you try giving it the .img file as input and the .mgz as output?

On Tue, 2 Mar 2010, Janani Dhinakaran wrote:

Hello to everyone!
Hope the new month is bringing better weather to all of you.

I am trying to load new data. I cd-d to the location of the files (.hdr and
.img). Now I am trying to convert the data. It doesn't recognise the
information. I've manually created the files JS, MRI, and Orig within to
allocate an appropriate path for it. Here is a copy of what I did. Please
let me knwo what I need to do.

Thank you!

s0964091@CRIC-0012:~/Desktop/Newdata/RAW_DATA$ cd 1_1
s0964091@CRIC-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert
/Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS
mri_convert /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS
mri_convert: can't determine type of output volume
s0964091@CRIC-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert
/Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/001.mgz
mri_convert /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/001.mgz
file not found or unknown file type for file /Desktop/Newdata/RAW_DATA/1_1
s0964091@CRIC-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert
/Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/mri/orig/001.mgz
mri_convert /Desktop/Newdata/RAW_DATA/1_1
/Desktop/Newdata/JS/mri/orig/001.mgz
file not found or unknown file type for file /Desktop/Newdata/RAW_DATA/1_1

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