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> On Mon, Apr 3, 2017 at 4:35 PM, Dhaval Shah <dshah@bnac.net> wrote:> Hi All,>> I am new and a very basic question about freesurfer processing.>> I ran recon-all on a high res-T1 image(128x128x80 matrix size), but> after recon-all the folder mri contains resulted (brain.mgz and> orig.mgz) T1 images has (127x128x128 matrix size).>> 1) how come the dimensions are changed? Is it normal?> 2) how can i keep the dimensions same as the original?> 3) is it possible that i will always get the higher matrix size image> data?>> for simplicity, i converted resulted orig.mgz to nii format and loaded> it in to fslview. Please find the first image (Original) and the> second image (after recon-all but orig.mgz).>> Your help is greatly appreciated.>> --> Kind regards,> Dhaval Shah>> MRI Research fellow,MRI Physicist,Clinical Trial Research Staff> Buffalo Neuroimaging Analysis Center> State University of New York at Buffalo> Department of Neurology> 100 High St., D-2, Buffalo, NY 14203>>>>> --> Kind regards,> Dhaval Shah>> MRI Research fellow,MRI Physicist,Clinical Trial Research Staff> Buffalo Neuroimaging Analysis Center> State University of New York at Buffalo> Department of Neurology> 100 High St., D-2, Buffalo, NY 14203>>_______________________________________________Freesurfer mailing listThe information in this e-mail is intended only for the person to whom it isaddressed. If you believe this e-mail was sent to you in error and the e-mailcontains patient information, please contact the Partners Compliance HelpLine athttp://www.partners.org/complianceline . If the e-mail was sent to you in errorbut does not contain patient information, please contact the sender and properlydispose of the e-mail.--Kind regards,
Dhaval Shah
MRI Research fellow,MRI Physicist,Clinical Trial Research StaffBuffalo Neuroimaging Analysis CenterState University of New York at BuffaloDepartment of Neurology100 High St., D-2, Buffalo, NY 14203dshah@bnac.net//http://mbl.bnac.net