Hi Doug and
Bruce,
There is a excellent segmentation in -surfs after editing
the pial and run -autorecon-pial by tkmedit and recon-all respectively. Some
voxels was removed from the brainmask.mgz in editing the pial. However the -aseg
image still have those voxels which I have removed from the brainmask.mgz. This
is why? Do I need to run -autorecon3 to fix the aseg?
There are brainmask.mgz(pic 1) and aseg(pic 2)
snapshots in the attachment.
Thanks.
All the best.
2013-12-14