On 6/29/2021 3:32 AM, Rosalia Dacosta Aguayo wrote:

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Dear Freesurfer team,

I am inspecting the different participants I have run recon-all -all and I have found different errors I would like to discuss with you before proceeding as I am new with this software.

1. I have found dura at some regions of the brain. I should use gcut or delete voxels?
I've never used gcut, but deleting voxels will work
2. I have found discontinuity in GM and what I should do with this (attached photo 2)
Not sure what you are pointing to. Some of the problems may be in the medial wall (which is not a problem).
3. In photo 1, not sure at some regions were to consider wm as it is not clear for me...any suggestion with this one? I think it should be done with cp, right?
I guess so. The data quality looks pretty low, so it might be hard to tell.

Kind regards,
Rosie



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