Hi all,
Thank you for all your amazing work!
I started using FreeSurfer recently and there are a couple of questions I was hoping someone here might be able to help me with:
- Does
anyone know of any way to silence recon-all's output or redirect it to
stdout when called programmatically through nipype? I tried a couple of
different approaches (using python's os.devull and creating a fake
file-handle that does nothing on write() calls), but I can't seem to be
able to get rid of it. Also, and I apologize if it exists and I simply
missed it, I think it would be great to simply add a --quiet flag or
something of the sort, considering the output is anyhow saved to a log file.
- Is there any more documentation on recon-all's output other that the ReconAllOutputFiles
page? I've noticed a lot of info is missing there. I would be more than
happy to contribute to it myself but I'm not sure what resources I can
use to gather more information, and also I'm having trouble finding the
corresponding documentation files on GitHub.
Thanks again and all the best!
Zvi