Not by default with our software. You could create white and pial surfaces, but they would not be very accurate, and there would be no way to fit the surfaces to the segmentations.

On 9/21/18 10:21 AM, yuanchao.zhang8@gmail.com wrote:

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Dear experts,

Is there any way I can calculate the cortical thickness based on gray matter and white matter binary images from other software.

I mean I have a image in native space with white matter voxels labelled as 10 and gray matter voxels labelled as 5.

Is there any way I can manage to calculate the cortical maps from this image using freesurfer?

Thanks a lot!

Best,

Yuanchao Zhang

yuanchao.zhang8@gmail.com
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