Hello,
I recently switch to version 5, and am having a problem with preproc-sess in version 5.0.
version: freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0
OS : Mac 10.6.5
When I ran:
preproc-sess -per-session -fwhm 5 -force -surface VM20 lhrh -df sessdirfile -s VM20 -fsd bold
I got the following error:
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[Yukos-iMac:sessions/VM/VMan] yuko% preproc-sess -per-session -fwhm 5 -force -surface VM20 lhrh -df sessdirfile -s VM20 -fsd bold
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preproc-sess logfile is log/preproc-sess.log
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$Id: preproc-sess,v 1.31.2.4 2010/07/26 15:55:24 greve Exp $
yuko
setenv FREESURFER_HOME /Applications/freesurfer/freesurfer
setenv SUBJECTS_DIR /Users/yuko/Documents/freesurfer/subjects
Darwin Yukos-iMac.local 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386
/Users/yuko/Documents/FreeSurfer/sessions/VM/VMan
/Applications/freesurfer/freesurfer/fsfast/bin/preproc-sess
-per-session -fwhm 5 -force -surface VM20 lhrh -df sessdirfile -s VM20 -fsd bold
Tue Nov 23 19:46:29 JST 2010
instem f
mc 1 f fmcpr
stc 0 fmcpr
sm 0
mask 1 brain
VM20 Template -----------------------------
mktemplate-sess -s VM20 -d /Users/yuko/Documents/FreeSurfer/sessions/VM -fsd bold
Session: /Users/yuko/Documents/FreeSurfer/sessions/VM/VM20 ----------------
Tue Nov 23 19:46:29 JST 2010
find: illegal option -- m
find: illegal option -- a
find: illegal option -- e
find: illegal option -- p
find: illegal option -- t
find: illegal option -- h
find: 1: No such file or directory
ERROR: no run directories found
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I found the same error reported in msg14982, but couldn't find a solution.
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg14982.html
Can anyone tell me what I need to do to make this work?
Yuko Yotsumoto
% additional info --------------------------------------------------------------------------------------------------------------------------------------------
My data are at:
sessions/VM/VM20/bold/001/f.nii
sessions/VM/VM20/bold/002/f.nii
..
sessions/VM/VM20/bold/009/f.nii
and my study directory is at:
sessions/VM/VMan/
subject is at:
subjects/VM20
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