is206878 diffusion_tutorial $ trac-all -path -c /volatile/tracula/conf/dmrirc_single_subject-serch 2>&1 | tee /volatile/tracula/results/output-path.log
INFO: SUBJECTS_DIR is /volatile/tracula/data/diffusion_recons
INFO: Diffusion root is /volatile/tracula/results
Actual FREESURFER_HOME /i2bm/local/freesurfer-5.1.0
trac-paths -c /volatile/tracula/results/Diff001/scripts/dmrirc.local -log /volatile/tracula/results/Diff001/scripts/trac-all.log -cmd /volatile/tracula/results/Diff001/scripts/trac-all.cmd
#-------------------------------------
/i2bm/local/freesurfer/bin/trac-paths 
#-------------------------------------
#@# Path reconstruction Thu Jul 26 10:20:44 CEST 2012
/i2bm/local/freesurfer/bin/dmri_paths --outdir /volatile/tracula/results/Diff001/dpath/lh.cst_AS_avg33_mni_flt --dwi /volatile/tracula/results/Diff001/dmri/dwi.nii.gz --grad /volatile/tracula/results/Diff001/dmri/bvecs --bval /volatile/tracula/results/Diff001/dmri/bvals --mask /volatile/tracula/results/Diff001/dlabel/diff/aparc+aseg_mask.flt.nii.gz --bpdir /volatile/tracula/results/Diff001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz --roi2 /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz --reg /volatile/tracula/results/Diff001/dmri/xfms/diff2mni.flt.mat --init /volatile/tracula/results/Diff001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_3.txt --nprior /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all --lprior /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all --seg /volatile/tracula/results/Diff001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5


cwd /volatile/tracula/data/diffusion_tutorial
cmdline /i2bm/local/freesurfer/bin/dmri_paths --outdir /volatile/tracula/results/Diff001/dpath/lh.cst_AS_avg33_mni_flt --dwi /volatile/tracula/results/Diff001/dmri/dwi.nii.gz --grad /volatile/tracula/results/Diff001/dmri/bvecs --bval /volatile/tracula/results/Diff001/dmri/bvals --mask /volatile/tracula/results/Diff001/dlabel/diff/aparc+aseg_mask.flt.nii.gz --bpdir /volatile/tracula/results/Diff001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz --roi2 /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz --reg /volatile/tracula/results/Diff001/dmri/xfms/diff2mni.flt.mat --init /volatile/tracula/results/Diff001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_3.txt --nprior /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all --lprior /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all --seg /volatile/tracula/results/Diff001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 
sysname  Linux
hostname is206878
machine  x86_64
user     vs226859
Output directory: /volatile/tracula/results/Diff001/dpath/lh.cst_AS_avg33_mni_flt
DWIs: /volatile/tracula/results/Diff001/dmri/dwi.nii.gz
Gradients: /volatile/tracula/results/Diff001/dmri/bvecs
B-values: /volatile/tracula/results/Diff001/dmri/bvals
Mask: /volatile/tracula/results/Diff001/dlabel/diff/aparc+aseg_mask.flt.nii.gz
BEDPOST directory: /volatile/tracula/results/Diff001/dmri.bedpostX
Max number of tracts per voxel: 2
Tract volume fraction threshold: 0.05
Initial control point file: /volatile/tracula/results/Diff001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_3.txt
End ROI 1: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz
End ROI 2: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz
Neighbor aseg prior: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all
Neighbor aseg label ID list: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all
Local aseg prior: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all
Local aseg label ID list: /volatile/tracula/results/Diff001/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all
Segmentation map: /volatile/tracula/results/Diff001/dlabel/mni/aparc+aseg.nii.gz
Type of aseg prior: 0
DWI-to-atlas affine registration: /volatile/tracula/results/Diff001/dmri/xfms/diff2mni.flt.mat
Number of burn-in samples: 200
Number of post-burn-in samples: 5000
Keep every: 5-th sample
Update proposal every: 0-th sample
Loading spline control points from /volatile/tracula/results/Diff001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_3.txt
Loading spline mask from /volatile/tracula/results/Diff001/dlabel/diff/aparc+aseg_mask.flt.nii.gz
Creating output directory /volatile/tracula/results/Diff001/dpath/lh.cst_AS_avg33_mni_flt
Loading DWIs from /volatile/tracula/results/Diff001/dmri/dwi.nii.gz
Loading mask from /volatile/tracula/results/Diff001/dlabel/diff/aparc+aseg_mask.flt.nii.gz
Loading BEDPOST parameter samples from /volatile/tracula/results/Diff001/dmri.bedpostX
niiRead(): error opening file /volatile/tracula/results/Diff001/dmri.bedpostX/merged_ph1samples.nii.gz
ERROR: Could not read /volatile/tracula/results/Diff001/dmri.bedpostX/merged_ph1samples.nii.gz
Linux is206878 2.6.38-14-generic #58~lucid1-Ubuntu SMP Thu Mar 29 15:43:21 UTC 2012 x86_64 GNU/Linux

trac-paths exited with ERRORS at Thu Jul 26 10:20:53 CEST 2012