Hi,

When I run make_average_surface, the script fails on line 117. The line in the script is
    cp ${FREESURFER_HOME}/average/surf/${hemi}.sphere.reg .
The error is "file not found"

Should the line read
    cp ${FREESURFER_HOME}/subjects/average7/surf/${hemi}.sphere.reg .
instead?

It seems obvious to me, but thought it better to double-check

I am using the 20040218 version of freesurfer, which has the following in the ${FREESURFER_HOME}/average directory:
[shell] ls /usr/local/freesurfer/average/
lh.atlas2002_simple.gcs rh.atlas2002_simple.gcs rigidly_aligned_brain_template.tif
lh.average.tif           rh.average.tif           talairach_mixed.gca
lh_trans_toSulc.gcs      rh_trans_toSulc.gcs      tissue_parms.txt

Thanks,

+glenn

-- 

I want to go farther, farther!

          A. E. L.

>  Glenn Lawyer                   <
>  +352 061 967 244               <
>  Instituttgruppe for psykiatri  <
>  Postboks 1130 Blindern         < 
>  0318 Oslo                      <
<  http://folk.uio.no/davidgl     >
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