Hi Folks,<div>I was looking at the autorecon2-cp, autorecon-pial and autorecon-wm flags in recon-all help and also here</div><div><a href="http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags">http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags</a></div>

<div><br></div><div>My interpretation is when I use autorecon-pial, I only need the command: </div><div>recon-all --autorecon-pial -s subject </div><div><br></div><div>While for autorecon2-cp and autorecon2-wm we need the command:</div>

<div><br></div><div>recon-all -autorecon2-cp -autorecon3 -s subject</div><div>recon-all -autorecon2-wm -autorecon3 -s subject</div><div><br></div><div>since for autorecon2-cp and autorecon2-wm only a subset of stages are processed as described in recon-all help:</div>

<div><div>-autorecon2-cp : process stages 12-23 (uses -f w/ mri_normalize, -keep w/ mri_seg)</div><div>-autorecon2-wm : process stages 15-23</div></div><div><br></div><div>Thanks</div><div>Mehul</div><div><br></div><div>
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