Hello,
I'm running recon-all on a second set of data. It ran smoothly until
mpr2mni305 success
and then it gave the following:
--------------------------------------------
tkregister2_cmdl --mov nu.mgz --targ /usr/local/freesurfer/average/mni305.cor.mgz --xfmout transforms/talairach.auto.xfm --vox2vox talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt --noedit --reg talsrcimg.reg.tmp.dat
tkregister_tcl /usr/local/freesurfer/lib/tcl/tkregister2.tcl
Vox2Vox Matrix
-0.003 -0.077 0.242 71.612;
0.001 0.055 -0.022 129.085;
-0.004 -0.904 1.028 97.306;
0.000 0.000 0.000 1.000;
target volume /usr/local/freesurfer/average/mni305.cor.mgz
movable volume nu.mgz
reg file talsrcimg.reg.tmp.dat
LoadVol 0
ZeroCRAS 0
$Id: tkregister2.c,v 1.86.2.12 2009/03/19 22:04:20 greve Exp $
Diagnostic Level -1
INFO: loading target /usr/local/freesurfer/average/mni305.cor.mgz
Ttarg: --------------------
-1.000 0.000 0.000 128.000;
0.000 0.000 1.000 -128.000;
0.000 -1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
INFO: loading movable nu.mgz
Tmov: --------------------
-1.000 0.000 0.000 128.000;
0.000 0.000 1.000 -128.000;
0.000 -1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
-0.003 -0.242 -0.077 35.722;
0.004 1.028 0.904 -15.429;
0.001 0.022 0.055 -5.367;
0.000 0.000 0.000 1.000;
---------------------------------------
---- Input registration matrix --------
-0.003 -0.242 -0.077 35.722;
0.004 1.028 0.904 -15.429;
0.001 0.022 0.055 -5.367;
0.000 0.000 0.000 1.000;
Determinant -0.000168945
subject = subject-unknown
RegMat ---------------------------
-0.003 -0.242 -0.077 35.722;
0.004 1.028 0.904 -15.429;
0.001 0.022 0.055 -5.367;
0.000 0.000 0.000 1.000;
register: file talsrcimg.reg.tmp.dat written
`talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt' -> `transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt'
removed `talsrcimg.4dfp.hdr'
removed `talsrcimg.4dfp.ifh'
removed `talsrcimg.4dfp.img'
removed `talsrcimg.4dfp.img.rec'
removed `talsrcimg.hdr'
removed `talsrcimg.img'
removed `talsrcimg.mat'
removed `talsrcimg.reg.tmp.dat'
removed `talsrcimg_g11.4dfp.hdr'
removed `talsrcimg_g11.4dfp.ifh'
removed `talsrcimg_g11.4dfp.img'
removed `talsrcimg_g11.4dfp.img.rec'
removed `talsrcimg_to_711-2C_as_mni_average_305_t4'
--------------------------------------------
Wed Mar 3 13:43:27 GMT 2010
talairach_avi done
cp transforms/talairach.auto.xfm transforms/talairach.xfm
#--------------------------------------------
#@# Talairach Failure Detection Wed Mar 3 13:43:28 GMT 2010
/home/s0964091/Desktop/Newdata/JS/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Wed Mar 3 13:43:28 GMT 2010
I don't understand this error. Please let me know what I can do to fix this.
Thank you
Jan
--
I am the Sun, I know no darkness.