Dear Experts,

I am attempting to initiate a longitudinal portion of the hippocampal subfield module and am getting an error. I was wondering if someone might have a suggestion for troubleshooting.

I am using the following version of freesurfer: freesurfer-Darwin-OSX-ElCapitan-dev-20180124-2459312abf

I have the Matlab runtime installed using the following command:

curl "https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2014bMAC.tar.gz" -o "runtime.tar.gz"

Here is the command I use to initiate the stream:

segmentHA_T1_long.sh SILVA008_Template

Here is the error message:

[arkadiysnewimac:Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits] arkadiy% segmentHA_T1_long.sh SILVA008_Template

#--------------------------------------------

#@# Longitudinal Hippocampal Subfields processing (T1) left Fri Jul  6 12:43:59 EDT 2018

------------------------------------------

Setting up environment variables

---

DYLD_LIBRARY_PATH is .:/Applications/freesurfer_Dev_El_Capitan//MCRv84//runtime/maci64:/Applications/freesurfer_Dev_El_Capitan//MCRv84//bin/maci64:/Applications/freesurfer_Dev_El_Capitan//MCRv84//sys/os/maci64:/Applications/freesurfer_Dev_El_Capitan/lib/gcc/lib:/Applications/freesurfer_6.0/lib/gcc/lib:/opt/X11/lib/flat_namespace

dyld: Library not loaded: @loader_path/libmwmclmcrrt.8.0.dylib

  Referenced from: /Applications/freesurfer_Dev_El_Capitan/bin/SegmentSubfieldsT1Longitudinal.app/Contents/MacOS/SegmentSubfieldsT1Longitudinal

  Reason: image not found

/Applications/freesurfer_Dev_El_Capitan/bin/run_SegmentSubfieldsT1Longitudinal.sh: line 37: 58577 Abort trap: 6           "${exe_dir}"/SegmentSubfieldsT1Longitudinal.app/Contents/MacOS/SegmentSubfieldsT1Longitudinal $args

Darwin arkadiysnewimac.mclean.harvard.edu 17.6.0 Darwin Kernel Version 17.6.0: Tue May  8 15:22:16 PDT 2018; root:xnu-4570.61.1~1/RELEASE_X86_64 x86_64

longitudinal subfields exited with ERRORS at Fri Jul  6 12:43:59 EDT 2018

For more details, see the log file /Volumes/silverilab/Arkadiy/Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits/SILVA008_Template/scripts/long-hippocampal-subfields-T1.log

I would love to hear if anyone has suggestions for fixing this.

Thanks,

arkadiy

-- 

Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow
McLean Imaging Center, McLean Hospital
Department of Psychiatry, Harvard Medical School