Dear all,

 

Has anyone run the longitudinal pipeline successfully using the WSL? I’m running it with Ubuntu 18.04.1 LTS and freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c.

 

I’m trying to process my first longitudinal data set following the instructions of the tutorial as close as possible. The data has been processed without issues and now I want to do the statistical analysis. When I run:

long_mris_slopes --qdec ./long.qdec.table.dat --meas thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time years --qcache fsaverage --sd $SUBJECTS_DIR

 

I get the following error:

File "/home/luesebri/Software/FreeSurfer/bin/long_mris_slopes", line 448

    print '\nERROR: Specify --qedc (and other required arguments)\n'

                                                                   ^

SyntaxError: invalid syntax

 

I get comparable errors for any other long_* command I try to run, e.g. long_qdec_table with or without any arguments gives:

File "/home/luesebri/Software/FreeSurfer/bin/long_qdec_table", line 119

   print '\nERROR: Specify --qedc'

                                  ^

SyntaxError: Missing parentheses in call to 'print'. Did you mean print('\nERROR: Specify --qedc')?

 

Does anyone have a clue where this error originates from using either WSL or Ubuntu 18.04?  

 

Best,

Falk

...............................................

 

Universitätsklinik für Neurologie

Otto-von-Guericke-Universität Magdeburg
Medizinische Fakultät
Leipziger Str. 44
39120 Magdeburg

 

Telefon: +49-391-6117-512

falk.luesebrink@med.ovgu.de
http://www.kneu.ovgu.de/kneu.html