External Email - Use Caution
Thanks, Fiona.
Is the error reproducible? Does it always die at the same step? Do you get the same problem with other subjects?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of
墨初 <530337973@qq.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 18 July 2018 at 10:15
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Re：segmentHA_T2.sh
External Email - Use Caution
hello，
I think RAM is enough。my
computer is imac pro.There is 16G DDDR3. This process takes up about 1-2G. The total RAM occupied is 5G. Thanks Fiona Ding.
---------------- External Email - Use Caution Weird! Maybe you ran out of RAM memory?
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
From: <freesurfer-bounces
on behalf of
墨初 <530337973
Reply-To: Freesurfer support list <freesurfer
Date: Tuesday, 17 July 2018 at 13:40
To: freesurfer <freesurfer
Subject: [Freesurfer] segmentHA_T2.sh
External Email - Use Caution
Dear freesurfer experts,
when i run the command“segmentHA_T2.sh subject001 T2.nii T2 1” ,it runs as following:
--------------
Making Left-Thalamus-Proper map to reduced label 10
--------------
Making Left-choroid-plexus map to reduced label 11
--------------
Making Left-VentralDC map to reduced label 12
--------------
Making Left-Accumbens-area map to reduced label 13
--------------
Making Unknown map to reduced label 14
Computing hyperparameters for estimation of Gaussians parameters
znzreadInt: znzread failed
No such file or directory
Estimating typical intensities of molecular layer and alveus
numberOfLabels: 2
Rasterizing mesh...here: 2
here2: 2
done
Smoothing mesh collection with kernel size 1.500000 ...Smoothing class: 0
Smoothing class: 1
Smoothing class: 2
Smoothing class: 3
Smoothing class: 4
Smoothing class: 5
Smoothing class: 6
Smoothing class: 7
Smoothing class: 8
Smoothing class: 9
Smoothing class: 10
Smoothing class: 11
Smoothing class: 12
Smoothing class: 13
done
numberOfImages = 2
Image: 0
Image: 2
Iteration 1 of 7
1 0.00035804
2 0.089592
fianally,it stop here and can't run anymore,no error reported。I
didn't know what‘s wrong？
What can i do？
Thanks very much
Fiona Ding