Dear FreeSurfer users!

I am new to Freesurfer, and I have succesfully managed to run recon-all on my data, for every subject.

Now I plan to use the output - some of the different cortical and subcortical brain structures as ROI's in my SPM analyses.

Then I would have to convert from freesurfer space to SPM space via the coordinates.

And - I would also have to convert from .mgz to .nii data format.

Does any have any tips on how to do this? Or a script?

Kind Regards,

Anna B. Josefson