Thank you for the reply. In the base/tmp directory there is one folder, "hippoSF_T1_long.v22_right" and an empty text file "filled.edits.txt". I don't see any directory pointing to the left hemisphere. In the right hemisphere directory, there are the following
files:
T1resampled_0.mgz
T1resampled_1.mgz
T1resampled_2.mgz
asegModBinDilated.mgz
asegModBinDilatedResampled.mgz
asegModCHA_tp_0.mgz
asegModCHA_tp_1.mgz
asegModCHA_tp_2.mgz
asegMod_tp_0.mgz
asegMod_tp_1.mgz
asegMod_tp_2.mgz
asegRotated_tp_1.mgz
asegRotated_tp_2.mgz
asmr1.mgz
asmr2.mgz
asmr3.mgz
compressionLookupTable.txt
discreteLabelsMergedBodyHeadNoMLorGCDGResampledT1_tp_1.mgz
discreteLabelsMergedBodyHeadNoMLorGCDG_tp_1.mgz
discreteLabelsMergedBodyHeadResampledT1_tp_1.mgz
discreteLabelsMergedBodyHead_tp_1.mgz
discreteLabelsMergedBodyHead_tp_2.mgz
discreteLabelsResampledT1_tp_1.mgz
discreteLabelsWholeBodyHeadResampledT1_tp_1.mgz
discreteLabelsWholeBodyHead_tp_1.mgz
discreteLabelsWholeBodyHead_tp_2.mgz
discreteLabels_all_tp_1.mgz
discreteLabels_all_tp_2.mgz
discreteLabels_tp_1.mgz
discreteLabels_tp_2.mgz
hippoAmygBinaryMask.mgz
hippoAmygBinaryMask_autoCropped.mgz
hippoAmygBinaryMask_autoCropped_opened.mgz
hippoAmygBinaryMask_tp_1.mgz
hippoAmygBinaryMask_tp_1_autoCropped.mgz
hippoAmygBinaryMask_tp_2.mgz
hippoAmygBinaryMask_tp_2_autoCropped.mgz
hippoMask.mgz
hippoMaskDilated.mgz
hippoMaskResampled.mgz
hippoMaskResampledDilated.mgz
imageDump.mgz
imageDump_rigidly_coregistered.mgz
image_tp_1.mgz
image_tp_2.mgz
kk2.mgz
rigidToAffineBase.lta
tp_1_to_base.lta
tp_2_to_base.lta
trash.lta
volumesAmygdala_tp_1.txt
volumesAmygdala_tp_2.txt
volumesHippo_tp_1.txt
volumesHippo_tp_2.txt
warpedMeshNoAffine_tp_1.txt.gz
warpedMeshNoAffine_tp_2.txt.gz
warpedMesh_tp_1.txt.gz
warpedMesh_tp_2.txt.gz
warpedOriginalMeshBase.txt.gz
warpedOriginalMeshTP1.txt.gz
warpedOriginalMeshTP2.txt.gz
Hope this helps to potentially make some headway? Thanks very much again in advance.