After installing the io package textread works.
Sent from Mail for Windows 10
From: Douglas N Greve
Sent: Saturday, January 30, 2016 2:06 AM
To: m.abouelyazid@gmail.com; Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] fast_selxavg3 error when Octave is used
Does octave now have a version of textread? I looked over my notes and
saw that it did not support it at one point, which I apparently forgot
and put it into the code. Can't do much about your space issue
On 01/29/2016 11:37 AM, m.abouelyazid@gmail.com wrote:
>
> Okaii, so I fixed that last issue by changing the version of octave
> installed then I found I needed to install FSL also. Problem is… now
> the virtual machine drive has run out of space…
>
> Sent from Mail <http://go.microsoft.com/fwlink/?LinkId=550986> for
> Windows 10
>
>
> *From: *m.abouelyazid@gmail.com <mailto:m.abouelyazid@gmail.com>
> *Sent: *Friday, January 29, 2016 12:01 PM
> *To: *Douglas Greve <mailto:greve@nmr.mgh.harvard.edu>
> *Subject: *RE: [Freesurfer] fast_selxavg3 error when Octave is used
>
> Are there any other paths that I need to add? because now I get
> another error
>
> Extension format = nii.gz
>
> error: `textread' undefined near line 210 column 17
>
> error: evaluating argument list element number 1
>
> error: evaluating argument list element number 1
>
> error: called from:
>
> error: /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m at line
> 210, column 10
>
> error: /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m at line
> 53, column 9
>
>
> *From: *Douglas Greve <mailto:greve@nmr.mgh.harvard.edu>
> *Sent: *Friday, January 29, 2016 11:41 AM
> *To: *m.abouelyazid@gmail.com <mailto:m.abouelyazid@gmail.com>; free
> surfer <mailto:freesurfer@nmr.mgh.harvard.edu>
> *Subject: *Re: [Freesurfer] fast_selxavg3 error when Octave is used
>
> yes
>
> On 1/28/16 9:31 PM, m.abouelyazid@gmail.com
> <mailto:m.abouelyazid@gmail.com> wrote:
>
> I am running on the virtual machine where I don’t have MATLAB so I
> installed Octave…
>
> Maybe I should include the folder into the Octave path?
>
>
> *From: *Douglas Greve <mailto:greve@nmr.mgh.harvard.edu>
> *Sent: *Friday, January 29, 2016 11:27 AM
> *To: *m.abouelyazid@gmail.com <mailto:m.abouelyazid@gmail.com>;
> freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>
> *Subject: *Re: [Freesurfer] fast_selxavg3 error when Octave is used
>
> Is that directory in your matlab path? does it run properly in matlab?
>
> On 1/28/16 8:36 PM, m.abouelyazid@gmail.com
> <mailto:m.abouelyazid@gmail.com> wrote:
>
> Yes, it exists in the location you mentioned…
>
>
> *From: *Douglas N Greve <mailto:greve@nmr.mgh.harvard.edu>
> *Sent: *Friday, January 29, 2016 2:27 AM
> *To: *freesurfer@nmr.mgh.harvard.edu
> <mailto:freesurfer@nmr.mgh.harvard.edu>
> *Subject: *Re: [Freesurfer] fast_selxavg3 error when Octave is
> used
>
> Does fast_fileexists.m exist in $FREESURFER_HOME/fsfast/toolbox ?
>
> On 01/28/2016 07:16 AM, m.abouelyazid@gmail.com
> <mailto:m.abouelyazid@gmail.com> wrote:
>
> >
>
> > Since I am a windows user I got the Virtualbox version of
> FreeSurfer
>
> > and to use fs fast, I installed Octave on the virtual
> machine, I set
>
> > the environment variables and then when I run the command
>
> >
>
> > selxavg3-sess -analysis rtopy.lh -sf sessid
>
> >
>
> > which runs a retinotopy analysis, I get the following error:
>
> >
>
> > sxa3pwd = /usr/local/freesurfer/projects/retinotopy_xxx
>
> >
>
> > sxa3cmd = /usr/local/freesurfer/fsfast/bin/selxavg3-sess
> -analysis
>
> > rtopy.lh -sf sessid
>
> >
>
> > error: `fast_fileexists' undefined near line 5 column 4
>
> >
>
> > ------------------------------------------
>
> >
>
> > ERROR: fast_selxavg3() failed\n
>
> >
>
> > Any idea of the cause of this error and how to run around?
>
> >
>
> > Thank you,
>
> >
>
> >
>
> >
>
> > _______________________________________________
>
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>
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>
> --
>
> Douglas N. Greve, Ph.D.
>
> MGH-NMR Center
>
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>
> Phone Number: 617-724-2358
>
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>
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>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
> Outgoing:
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>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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